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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    33   0.088
At4g37190.1 68417.m05265 expressed protein                             30   1.1  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   1.9  
At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At2g25660.1 68415.m03075 expressed protein                             27   5.8  
At1g10385.1 68414.m01170 hypothetical protein                          27   7.7  

>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 273 LEVDWLDARNICRRHCMDAVSLETPQENEFVKQR 374
           ++V W D    CRR  +  + +ETP ++EFV ++
Sbjct: 458 VDVSWQDGTIECRREAITLIPIETPGDHEFVSEQ 491


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = +2

Query: 41  VRASVFHSLHQHYRDEPALL-----PGGSSFVRGTMLR*GPETSSFTRSQELCQPSTPFD 205
           V A    ++   Y + P LL     P      + T+     +  SF+R    C+  TP  
Sbjct: 227 VAADFLENMADEYTNVPVLLYSVRTPMSQMSSKKTVSNKLHDAISFSRLSSFCKLFTPIG 286

Query: 206 IPRCTGSTTFVFL*LG 253
           +P  TGS    FL LG
Sbjct: 287 LPSLTGSKASKFLNLG 302


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 116 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 21
           +CC Q KV   L S +ED E  +R +  +GYG
Sbjct: 5   SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35


>At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 386

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 230 TFVFL*LGTCSNTQLRSGLAGRKEHLPQALHGRCFLRNTPGKRICKAKDRSRKHTLHL 403
           TFV L    C +  LRSG   R+ H  +   G  F R+T         D++   +L L
Sbjct: 5   TFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPL 62


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 2   IKAARARRSRSPQVRASVFHSLHQHYRDEPALL 100
           I A +    RS     S FHSL Q   DEP++L
Sbjct: 377 ISAKKRILERSASAALSYFHSLSQQKLDEPSVL 409


>At1g10385.1 68414.m01170 hypothetical protein
          Length = 754

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 352 SWGVSKETASMQCLRQMFLASSQSTSKLRVGA-CSQLKKYECST 224
           +W V +  +    L++  LASS +   LRV A C QL    CS+
Sbjct: 309 TWAVKQAESFALLLKRHTLASSAAAGSLRVTAECVQLCASHCSS 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,466
Number of Sequences: 28952
Number of extensions: 262984
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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