BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312F12f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 33 0.088 At4g37190.1 68417.m05265 expressed protein 30 1.1 At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 29 1.9 At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) fa... 29 2.5 At2g25660.1 68415.m03075 expressed protein 27 5.8 At1g10385.1 68414.m01170 hypothetical protein 27 7.7 >At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family protein low similarity to ubiquitin-conjugating BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating enzyme [Mus musculus] GI:3319990; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme Length = 1102 Score = 33.5 bits (73), Expect = 0.088 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +3 Query: 273 LEVDWLDARNICRRHCMDAVSLETPQENEFVKQR 374 ++V W D CRR + + +ETP ++EFV ++ Sbjct: 458 VDVSWQDGTIECRREAITLIPIETPGDHEFVSEQ 491 >At4g37190.1 68417.m05265 expressed protein Length = 562 Score = 29.9 bits (64), Expect = 1.1 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Frame = +2 Query: 41 VRASVFHSLHQHYRDEPALL-----PGGSSFVRGTMLR*GPETSSFTRSQELCQPSTPFD 205 V A ++ Y + P LL P + T+ + SF+R C+ TP Sbjct: 227 VAADFLENMADEYTNVPVLLYSVRTPMSQMSSKKTVSNKLHDAISFSRLSSFCKLFTPIG 286 Query: 206 IPRCTGSTTFVFL*LG 253 +P TGS FL LG Sbjct: 287 LPSLTGSKASKFLNLG 302 >At1g63910.1 68414.m07236 myb family transcription factor (MYB103) contains Pfam profile: PF00249 myb-like DNA-binding domain Length = 370 Score = 29.1 bits (62), Expect = 1.9 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 116 NCCRQAKVPAHLCSVDEDCETRMRVLAENGYG 21 +CC Q KV L S +ED E +R + +GYG Sbjct: 5 SCCNQQKVKRGLWSPEED-EKLIRYITTHGYG 35 >At4g28890.1 68417.m04129 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 386 Score = 28.7 bits (61), Expect = 2.5 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = +2 Query: 230 TFVFL*LGTCSNTQLRSGLAGRKEHLPQALHGRCFLRNTPGKRICKAKDRSRKHTLHL 403 TFV L C + LRSG R+ H + G F R+T D++ +L L Sbjct: 5 TFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPL 62 >At2g25660.1 68415.m03075 expressed protein Length = 2146 Score = 27.5 bits (58), Expect = 5.8 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 2 IKAARARRSRSPQVRASVFHSLHQHYRDEPALL 100 I A + RS S FHSL Q DEP++L Sbjct: 377 ISAKKRILERSASAALSYFHSLSQQKLDEPSVL 409 >At1g10385.1 68414.m01170 hypothetical protein Length = 754 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 352 SWGVSKETASMQCLRQMFLASSQSTSKLRVGA-CSQLKKYECST 224 +W V + + L++ LASS + LRV A C QL CS+ Sbjct: 309 TWAVKQAESFALLLKRHTLASSAAAGSLRVTAECVQLCASHCSS 352 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,428,466 Number of Sequences: 28952 Number of extensions: 262984 Number of successful extensions: 722 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 722 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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