Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3370| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   2e-08
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          27   7.1  
SB_22403| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)                     27   9.4  

>SB_3370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 209 HAWGDSLKEAFEQCGMAMFGYMTELEYVQIKDVHTIEA 322
           + WGD LKEAFEQ  +AMFGYMT+LE V+IK    IEA
Sbjct: 14  YEWGDDLKEAFEQVAVAMFGYMTDLETVEIKREELIEA 51


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 105 NNVTKFY*YMCLRTNTLTSLPSLIIQFYHYINSS 4
           +N   ++   C  T T  ++P    Q+YHY N S
Sbjct: 344 HNTVSYHTIPCHTTRTCHTIPYHTTQYYHYTNMS 377


>SB_22403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  NFVTLLKTIMDEELGGISEEYYDIPPVKYEYLDHTA 196
           N +  L T  D   G IS + Y  P VK++YL HT+
Sbjct: 35  NHLPALHTTRD---GFISTDLYSKPTVKHQYLFHTS 67


>SB_36173| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 623

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 89  NFVTLLKTIMDEELGGISEEYYDIPPVKYEYLDHTA 196
           NF+ +  T+ D   G IS++ Y  P  K++YL HT+
Sbjct: 535 NFLDVSLTLRD---GFISKDLYSKPTDKHQYLFHTS 567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,371
Number of Sequences: 59808
Number of extensions: 257921
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)