Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41830.1 68418.m05093 F-box family protein-related contains a...    28   3.3  
At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing pro...    28   4.4  

>At5g41830.1 68418.m05093 F-box family protein-related contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At3g44180, At1g56610,
           At3g58890, At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 463

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 152 YDIPPVKY-EYLDHTADVQLHAWGDSLKEA 238
           +DIP + Y EYLD  AD   H   DSL EA
Sbjct: 207 FDIPNLVYLEYLDTIADKYQHVRFDSLVEA 236


>At2g32490.1 68415.m03970 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 217

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 295 LDVLKLGHVTEHRHPALLEGFFKTV 221
           LD+ +L H+  + HP LL   F+T+
Sbjct: 138 LDIWRLVHIRHYLHPLLLSSSFETI 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,074,306
Number of Sequences: 28952
Number of extensions: 183442
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)