Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F08f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    34   9e-04
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   8.7  

>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 33.9 bits (74), Expect = 9e-04
 Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +3

Query: 201 MKIRFCIFIHSRRINRCNFSQFFY*YHIT*YXXXXXXXXXXXXXXXXXCNYWG-IY*LIS 377
           M  R CI I S R N  NFS+F    H T                     Y G I  LI 
Sbjct: 1   MSTRICIPISSGRTNGSNFSKFIN-CHYTSGHLLGSSSLPLRSFYRSRIRYQGRISSLIL 59

Query: 378 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 506
            IY    K    + +I  +I  SK NI S+ F R   N  TIF
Sbjct: 60  PIYGLSTKPKIMQGAISNHIQGSKPNILSSAFPRLKRNARTIF 102


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 378 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTST 500
           F++  FI +L+T   I+Y+++ +    F  T  +F   TST
Sbjct: 145 FVFCYFI-YLFTVYYIYYSVHEASIINFGYTLAKFMIFTST 184


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 426 FYNIYWSKYNIFSTTFFRFSWNTSTIFRLSR 518
           FY IY   YNI + +   +    +T  R+++
Sbjct: 39  FYKIYKYTYNIVAVSLTAYMVYITTNLRITQ 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,246
Number of Sequences: 336
Number of extensions: 1400
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)