Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312F08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 190 6e-49
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054) 27 9.4
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 190 bits (463), Expect = 6e-49
Identities = 91/149 (61%), Positives = 110/149 (73%)
Frame = +1
Query: 73 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 252
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTGV
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 253 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFT 432
ILANSS+D+ +HDTYYVVAHFHYVLS + TG N KI F+
Sbjct: 61 ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120
Query: 433 IFIGVNITFFPQHFLGLAGIPRRYSDYPD 519
+FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = +1
Query: 385 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 519
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 469 HFLGLAGIPRRYSDYPD 519
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 469 HFLGLAGIPRRYSDYPD 519
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 469 HFLGLAGIPRRYSDYPD 519
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 469 HFLGLAGIPRRYSDYPD 519
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 469 HFLGLAGIPRRYSDYPD 519
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 469 HFLGLAGIPRRYSDYPD 519
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 52 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 201
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 372 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 494
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 448 NITFFPQHFLGLAGIPRRY 504
+I F +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192
>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 503 YRRGIPAKPKKCCGKNVIFTP 441
Y R I A+ K+C GKNV+ P
Sbjct: 120 YFRAIIARCKECLGKNVVLIP 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,959,355
Number of Sequences: 59808
Number of extensions: 144106
Number of successful extensions: 252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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