Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    85   5e-19
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    84   8e-19
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    66   2e-13
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    64   9e-13
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   8.7  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 84.6 bits (200), Expect = 5e-19
 Identities = 42/77 (54%), Positives = 50/77 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 138 VQGGSVLHLVLALRGGE 88
           +Q  S LHLVL LRGG+
Sbjct: 669 IQKESTLHLVLRLRGGQ 685



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532



 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608



 Score = 81.4 bits (192), Expect = 4e-18
 Identities = 41/76 (53%), Positives = 48/76 (63%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQR IF+GKQ+ D +T  DY 
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 83.8 bits (198), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 66.1 bits (154), Expect = 2e-13
 Identities = 32/62 (51%), Positives = 39/62 (62%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQ 133
           +Q
Sbjct: 61  IQ 62


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 63.7 bits (148), Expect = 9e-13
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQR IF+GKQ+ D +T  DY 
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 138 VQ 133
           +Q
Sbjct: 109 IQ 110



 Score = 63.3 bits (147), Expect = 1e-12
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = -3

Query: 216 GIPPQQQRLIFSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 91
           GIPP QQRLIF+GKQ+ D +T  DY +Q  S LHLVL LRGG
Sbjct: 7   GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 48


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 476 VKNKNNPLRTPSCRIRHEESG 414
           V++KN P  TP     HE  G
Sbjct: 344 VRHKNTPYHTPEPDCIHELLG 364


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,899
Number of Sequences: 336
Number of extensions: 1935
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)