Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   8e-17
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   8e-17
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)                   84   8e-17
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)                   84   8e-17
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)             66   2e-11
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)             61   6e-10
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)             51   7e-07
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)             34   0.082
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                34   0.082
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     31   0.58 
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532


>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
          Length = 381

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380


>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
          Length = 147

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 138 VQGGSVLHLVLALRGG 91
           +Q  S LHLVL LRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VK    K   +D+E  D            EGIPP+ QRL++  +++ D ++  DY 
Sbjct: 77  MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135

Query: 138 VQGGSVLHLVL 106
           ++ GS+LHL L
Sbjct: 136 IKQGSILHLFL 146


>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
          Length = 142

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 32/62 (51%), Positives = 39/62 (62%)
 Frame = -3

Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
           M I VKTLTGK I +++EP D            EGIPP QQRLIF+GKQ+ D +T  DY 
Sbjct: 79  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138

Query: 138 VQ 133
           +Q
Sbjct: 139 IQ 140


>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
          Length = 150

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = -3

Query: 213 IPPQQQRLIFSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 91
           IPP QQRLIF+GKQ+ D +T  DY +Q  S LHLVL LRGG
Sbjct: 2   IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 42


>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
          Length = 333

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -3

Query: 312 IKVKTLTGKEIEIDIE-PXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKV 136
           I V TLTG+ I I  + P               G P  QQRL+F+G+ ++DE T +   +
Sbjct: 73  IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132

Query: 135 QGGSVLHLVLALRGGE 88
             G+ LHL++ L GGE
Sbjct: 133 FAGATLHLIVRLLGGE 148


>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
          Length = 198

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 216 GIPPQQQRLIFSGKQMNDEKTAQDY 142
           GIP ++QRLIF GK + DEK  +++
Sbjct: 21  GIPAERQRLIFKGKVLQDEKKLKEF 45


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 216 GIPPQQQRLIFSGKQMNDEKTAQDY 142
           GIP ++QRLIF GK + DEK  +++
Sbjct: 1   GIPAERQRLIFKGKVLQDEKKLKEF 25


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = -3

Query: 336 NYNSFKMLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMN 166
           N  S  M+I  KTL  +  +++I   +            +G    P    +LI++GK +N
Sbjct: 61  NIKSVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILN 120

Query: 165 DEKTAQDYKVQGGSVLHLVLA 103
           D+   ++Y +   S + +++A
Sbjct: 121 DDNPLKEYNIDEKSFVVIMVA 141


>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 189 IFSGKQMNDEKTAQDYKVQGGSVLHLVLALRGGE 88
           +  G  +ND+ + +   ++  +VL LVL ++GGE
Sbjct: 273 VMRGPDINDDGSHERESLRANAVLPLVLRMKGGE 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,051
Number of Sequences: 59808
Number of extensions: 202981
Number of successful extensions: 483
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)