Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312F07f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 105 2e-23
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 105 2e-23
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 81 3e-16
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 80 8e-16
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 80 8e-16
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 80 8e-16
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 80 8e-16
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 80 8e-16
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 80 8e-16
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 80 8e-16
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 80 8e-16
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 80 8e-16
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 80 8e-16
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 80 8e-16
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 80 8e-16
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 80 8e-16
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 80 8e-16
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 80 8e-16
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 80 8e-16
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 71 6e-13
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 66 1e-11
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 43 1e-04
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER... 42 3e-04
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 40 8e-04
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 39 0.002
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 39 0.002
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 37 0.007
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 37 0.007
At5g16090.1 68418.m01880 ubiquitin family protein contains INTER... 36 0.017
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 36 0.017
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 36 0.017
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 36 0.022
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 35 0.029
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 35 0.038
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 33 0.12
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 33 0.12
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 33 0.12
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 32 0.27
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 30 1.1
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 29 1.4
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 29 1.4
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 29 1.9
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 29 1.9
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 29 1.9
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 29 2.5
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 28 4.4
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 105 bits (252), Expect = 2e-23
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = -3
Query: 315 LIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKV 136
+IKVKTLTGKEIEIDIEP D EGIPP QQRLI++GKQ+ D+KTA+DY +
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 137
Query: 135 QGGSVLHLVLALRGG 91
+GGSVLHLVLALRGG
Sbjct: 138 EGGSVLHLVLALRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 105 bits (251), Expect = 2e-23
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = -3
Query: 315 LIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKV 136
+IKVKTLTGKEIEIDIEP D EGIPP QQRLI++GKQ+ D+KTA+DY +
Sbjct: 78 MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAI 137
Query: 135 QGGSVLHLVLALRGG 91
+GGSVLHLVLALRGG
Sbjct: 138 EGGSVLHLVLALRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 81.4 bits (192), Expect = 3e-16
Identities = 41/76 (53%), Positives = 53/76 (69%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M IKVKTLT K+I+I+IE D EGIPP QR++++GKQ+ D+ TA+ Y
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 138 VQGGSVLHLVLALRGG 91
++ GSVLHLVLALRGG
Sbjct: 61 LERGSVLHLVLALRGG 76
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/76 (52%), Positives = 49/76 (64%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EG+PP QQRLIF+GKQ++D +T DY
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 139 IQKESTLHLVLRLRGG 154
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/76 (50%), Positives = 46/76 (60%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I V+TLT K I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL L GG
Sbjct: 215 IQKESTLHLVLRLCGG 230
Score = 70.5 bits (165), Expect = 6e-13
Identities = 38/76 (50%), Positives = 44/76 (57%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I KTLT K I ID+ D EGIP QQRLIFSGK ++D +T DY
Sbjct: 3 MQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYS 62
Query: 138 VQGGSVLHLVLALRGG 91
+Q S+LHL L LRGG
Sbjct: 63 IQKDSILHLALRLRGG 78
Score = 67.7 bits (158), Expect = 4e-12
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMND-EKTAQDY 142
M I V TLTGK I +++E D E I P QQRLIF+G+Q+ D T DY
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 141 KVQGGSVLHLVLALRGGE*SGL**FSFVFI 52
+Q S LHLVL LRGGE G F F+F+
Sbjct: 291 NIQKESTLHLVLRLRGGECFG---FIFLFL 317
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 77.0 bits (181), Expect = 7e-15
Identities = 40/76 (52%), Positives = 47/76 (61%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D E IPP QQRLIF+GKQ+ D +T DY
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYN 211
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 212 IQKESTLHLVLRLRGG 227
Score = 72.9 bits (171), Expect = 1e-13
Identities = 40/76 (52%), Positives = 47/76 (61%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T D
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-N 135
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 136 IQKESTLHLVLRLRGG 151
Score = 47.6 bits (108), Expect = 5e-06
Identities = 25/50 (50%), Positives = 30/50 (60%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQM 169
M I VKTLTGK I +++E EGIPP QQRLIF+GKQ+
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 277
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 75.4 bits (177), Expect = 2e-14
Identities = 40/76 (52%), Positives = 46/76 (60%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGI P QQRLIF+GKQ D +T DY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYN 212
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 71.7 bits (168), Expect = 3e-13
Identities = 37/76 (48%), Positives = 45/76 (59%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I +KTLTGK +++E D EGIPP Q RLIF+GKQ+ D +T DY
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
VQ S LHL+L RGG
Sbjct: 61 VQEDSTLHLLLRFRGG 76
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 80.2 bits (189), Expect = 8e-16
Identities = 41/76 (53%), Positives = 48/76 (63%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VKTLTGK I +++E D EGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL LRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 70.5 bits (165), Expect = 6e-13
Identities = 38/74 (51%), Positives = 43/74 (58%)
Frame = -3
Query: 312 IKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 133
I KTLT K I +D+E D EGIP QQRLIF+GKQ+ D T DY +Q
Sbjct: 5 IYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQ 64
Query: 132 GGSVLHLVLALRGG 91
S LHLVL LRGG
Sbjct: 65 KESTLHLVLRLRGG 78
Score = 70.1 bits (164), Expect = 8e-13
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I V+TLTGK I ++++ D EGI P+QQRLIF+GKQ+ D +T DY
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYN 138
Query: 138 VQGGSVLHLVLALRGG 91
+Q S LHLVL L GG
Sbjct: 139 IQKESTLHLVLRLCGG 154
Score = 58.8 bits (136), Expect = 2e-09
Identities = 33/74 (44%), Positives = 41/74 (55%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I +KTLTGK I +++E D EGI P QQ LIF G+Q+ D T DY
Sbjct: 552 MQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYD 611
Query: 138 VQGGSVLHLVLALR 97
+ S L+LVL LR
Sbjct: 612 IHKKSTLYLVLRLR 625
Score = 57.6 bits (133), Expect = 5e-09
Identities = 34/76 (44%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQ--QRLIFSGKQMNDEKTAQD 145
M I VKTLT K I +++E D EGI PQ QRLIF GK++ D T D
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 144 YKVQGGSVLHLVLALR 97
Y +Q S LHLVL ++
Sbjct: 379 YSIQKESTLHLVLGMQ 394
Score = 50.0 bits (114), Expect = 9e-07
Identities = 27/76 (35%), Positives = 36/76 (47%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I VK GK I +++ D G PP QQ L+F G Q+ D +T DY
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 138 VQGGSVLHLVLALRGG 91
++ S LHL +R G
Sbjct: 453 IRNESTLHLFFHIRHG 468
Score = 50.0 bits (114), Expect = 9e-07
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = -3
Query: 303 KTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKVQGGS 124
+T T K I +++E D GIP +QRLIF G+ + +T DY +Q GS
Sbjct: 481 ETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGSRTLLDYNIQKGS 540
Query: 123 VLHLVLALRGG 91
+H + RGG
Sbjct: 541 TIHQLFLQRGG 551
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 303 KTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQM--NDEKTAQDYKVQG 130
K T + + +E D EG+ P QRLIF G+++ D +T DY ++
Sbjct: 165 KNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDNRTLADYGIRN 224
Query: 129 GSVLHLVLALRG 94
S L L L LRG
Sbjct: 225 RSTLCLALRLRG 236
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -3
Query: 300 TLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKVQGGSV 121
+ TG+ +++E D E IP RLIF+GK + +T Y +Q GS
Sbjct: 249 SFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRTLAHYNIQKGST 308
Query: 120 LHLVLALRGG 91
L+LV R G
Sbjct: 309 LYLVTRFRCG 318
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/73 (43%), Positives = 42/73 (57%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M I +KTLTG+ I +++E D +GIP QQRLIF GKQ+ D T DY
Sbjct: 86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYN 145
Query: 138 VQGGSVLHLVLAL 100
+Q S+LHL+ L
Sbjct: 146 IQNDSILHLIKRL 158
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -3
Query: 312 IKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 133
+ +KTL + + + G+P QQRLIF G+ + D+ +Y ++
Sbjct: 26 LNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLE 85
Query: 132 GGSVLHLVL 106
G LHL++
Sbjct: 86 NGHTLHLIV 94
>At1g64470.1 68414.m07309 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 213
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -3
Query: 345 TINNYNSFKMLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQM- 169
T +Y S K ++ +++G + + I D G ++Q+L+FSG+++
Sbjct: 26 TTTHY-SVKSVLVFLSVSGSTMPMLILESDSIAEVKLRIQTCNGFRVRRQKLVFSGRELA 84
Query: 168 NDEKTAQDYKVQGGSVLHLVLAL 100
+ +DY V GGSVLHLVL L
Sbjct: 85 RNASRVKDYGVTGGSVLHLVLKL 107
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPX-DXXXXXXXXXXXXEGIPP-QQQRLIFSGKQMNDEKTAQD 145
+L+ V T GK + ++ + +G P Q ++F G++++D +
Sbjct: 111 LLVTVITTCGKVFQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDG 170
Query: 144 YKVQGGSVLHLVL 106
G SV+HL++
Sbjct: 171 ICKDGNSVIHLLV 183
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 40.3 bits (90), Expect = 8e-04
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG--IPPQQQRLIFSGKQMNDEKTAQD 145
M I VKTL+G EI+++P D +G P +Q LI GK + DE T ++
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 144 YKVQGGSVLHLVLALRGGE*SG 79
V S + ++L+ SG
Sbjct: 61 NNVVENSFIVIMLSKTKASPSG 82
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMNDEKTAQ 148
M I VKTL G EI+++P D +G P +Q LI GK + DE T +
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 147 DYKVQGGSVLHLVL 106
+ KV S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMNDEKTAQ 148
M I VKTL G EI+++P D +G P +Q LI GK + DE T +
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 147 DYKVQGGSVLHLVL 106
+ KV S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -3
Query: 339 NNYNSFKMLIKVKTLTG-KEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMND 163
N S ++ I V+ ++G K I I E D IP +QR+I+ GKQ+
Sbjct: 88 NRPESTRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQR 147
Query: 162 EKTAQDYKVQGGSVLHLVLALRGGE 88
E + Y ++ + L LV ++ E
Sbjct: 148 ENSLTYYSIEQDASLQLVARMQSTE 172
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGK 175
M+I +KTLTG+ +++ D EGIP +QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
>At5g16090.1 68418.m01880 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 142
Score = 35.9 bits (79), Expect = 0.017
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMNDEKTAQ 148
M I VKTL G EI+++P D G P QQ LI +++ DE T +
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 147 DYKVQGGSVLHLVL 106
KV SV+ +++
Sbjct: 61 ANKVFDKSVIAIII 74
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 300 TLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQM-NDEKTAQDYKVQGGS 124
TL G I + + D G + Q+L+F G+++ +DY V G+
Sbjct: 40 TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGN 99
Query: 123 VLHLVLAL 100
+LHLVL L
Sbjct: 100 ILHLVLKL 107
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 315 LIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG--IPPQQQRLIFSGKQMNDEKTAQDY 142
++ VKT GK +E G + P +Q +++ G+++ D+ D
Sbjct: 112 VLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDI 171
Query: 141 KVQGGSVLHLVL 106
SVLHL++
Sbjct: 172 CRNDDSVLHLLV 183
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 300 TLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQM-NDEKTAQDYKVQGGS 124
TL G I + + D G + Q+L+F G+++ +DY V G+
Sbjct: 40 TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGN 99
Query: 123 VLHLVLAL 100
+LHLVL L
Sbjct: 100 ILHLVLKL 107
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 315 LIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG--IPPQQQRLIFSGKQMNDEKTAQDY 142
++ VKT GK +E G + P +Q +++ G+++ D+ D
Sbjct: 112 VLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDI 171
Query: 141 KVQGGSVLHLVL 106
SVLHL++
Sbjct: 172 CRNDDSVLHLLV 183
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 35.5 bits (78), Expect = 0.022
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 213 IPPQQQRLIFSGKQMNDEKTAQDYKVQGGSVLHLV 109
+P QQRLI+ G+ + D++T Y +Q +H+V
Sbjct: 53 VPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMV 87
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 213 IPPQQQRLIFSGKQMNDEKTAQDYKVQGGSVLHLV 109
+P QQRLI+ G+ + D++T Y +Q +H+V
Sbjct: 53 VPANQQRLIYKGRILKDDQTLLSYGLQADHTVHMV 87
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 34.7 bits (76), Expect = 0.038
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 312 IKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQ-RLIFSGKQMNDEKTAQDYKV 136
IK+K L + +E G+ P++Q RL+F G+ + +++ DY V
Sbjct: 13 IKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDYHV 72
Query: 135 QGGSVLHLV 109
+ G L+LV
Sbjct: 73 EEGHTLYLV 81
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 33.1 bits (72), Expect = 0.12
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMNDEKTAQ 148
M + VKTL G EI + P D +G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 147 DYKV--QGGSVLHLVLALRGG 91
+ KV +G V+ L + GG
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGG 81
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 33.1 bits (72), Expect = 0.12
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMNDEKTAQ 148
M + VKTL G EI + P D +G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 147 DYKV--QGGSVLHLVLALRGG 91
+ KV +G V+ L + GG
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGG 81
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 33.1 bits (72), Expect = 0.12
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEG---IPPQQQRLIFSGKQMNDEKTAQ 148
M + VKTL G EI + P D +G P QQ LI +GK + DE +
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 147 DYKV--QGGSVLHLVLALRGG 91
+ KV +G V+ L + GG
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGG 81
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 31.9 bits (69), Expect = 0.27
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXD---XXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQ 148
M + VKTL G EI + P D + P QQ LI +GK + DE T
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 147 DYKVQGGSVLHLVLA 103
+ KV L ++L+
Sbjct: 61 ENKVTEEGFLVVMLS 75
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 300 TLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMN-DEKTAQDYKVQGGS 124
T+ G I + D +G ++Q+L++ G++++ ++ +DY + G
Sbjct: 38 TIAGSVIPKRVMESDSIASVKLRIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGK 97
Query: 123 VLHLVLAL 100
+LHLV+ L
Sbjct: 98 LLHLVIRL 105
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 195 RLIFSGKQMNDEKTAQDYKVQGGSVLHLV 109
++ + GK++ DEK+ + VQ S++HL+
Sbjct: 542 KMFYMGKELEDEKSLAEQNVQPNSLVHLL 570
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 195 RLIFSGKQMNDEKTAQDYKVQGGSVLHLV 109
++ + GK+++DEK+ VQ S++HL+
Sbjct: 703 KMFYKGKELDDEKSLAAQNVQPNSLVHLI 731
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 312 IKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYKVQ 133
++V T++ EI I+ GI ++QRL+F GK+ D + V
Sbjct: 81 LRVSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGVG 140
Query: 132 GGSVLHLV 109
G + L+
Sbjct: 141 DGDKVFLL 148
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 216 GIPPQQQRLIFSGKQMNDEK 157
G+ P+QQRL+F GK+ D +
Sbjct: 103 GLEPKQQRLVFKGKEREDHE 122
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M + + T TG I I+ + +GIP +Q L GK + D+ DY
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 138 VQGGSVL 118
+ S+L
Sbjct: 61 ILFESLL 67
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M + V+ +G IDI D + IP +Q + F GK + D ++
Sbjct: 1 MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWD 60
Query: 138 VQGGSVLHLVLA 103
+ +LHL ++
Sbjct: 61 ILQNPLLHLSIS 72
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -3
Query: 318 MLIKVKTLTGKEIEIDIEPXDXXXXXXXXXXXXEGIPPQQQRLIFSGKQMNDEKTAQDYK 139
M + + T TG I I+ + +GIP +Q L GK + D+ DY
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 138 V 136
+
Sbjct: 61 I 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,147,210
Number of Sequences: 28952
Number of extensions: 155255
Number of successful extensions: 457
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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