Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         31   0.76 
SB_50152| Best HMM Match : TPR_1 (HMM E-Value=0.0019)                  29   2.3  
SB_39909| Best HMM Match : NHL (HMM E-Value=7.4e-05)                   29   3.1  
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)                   28   4.1  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         28   5.4  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)                      27   9.4  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 25  FQNTNNNYHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQIDC 156
           FQN++++   D KE +D     + D  +K+    L C  N   C
Sbjct: 333 FQNSDSSDSDDEKEEEDETNKKVEDNAKKMAAIALPCYLNSAAC 376


>SB_50152| Best HMM Match : TPR_1 (HMM E-Value=0.0019)
          Length = 94

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 25  FQNTNNNYHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQIDC 156
           F+N++++   D KE +D     + D  +K+    L C  N   C
Sbjct: 6   FKNSDSSDSDDEKEEEDETNKKVEDNAKKMAAIALPCYLNSAAC 49


>SB_39909| Best HMM Match : NHL (HMM E-Value=7.4e-05)
          Length = 406

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +1

Query: 46  YHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQIDCPVICKESYDEFNICA 201
           ++   K   D++    +D    V RC  +C ++ +DC   C   ++  ++CA
Sbjct: 72  FYCGSKGGADTIEHMYQDIFSAVNRCA-RCVQDDLDCICHCDMCFENKSVCA 122


>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
          Length = 1055

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +1

Query: 46  YHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQIDCPVICKESYDEFNICA 201
           ++   K   D++    +D    V RC  +C ++ +DC   C   ++  ++CA
Sbjct: 388 FYCGSKGGADTIEHMYQDIFSAVNRCA-RCVQDDLDCICHCDICFENKSVCA 438


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 102 MPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFATK 257
           M ++ TLR  ++K  D+  C   +K+  ++H R V+ KK+++ +   D   K
Sbjct: 534 MQKNLTLRAAINK-LDQQVCESVKKMNALKHTRKVQEKKLKQLQTEYDQMVK 584


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 36   QQQLPFRFQRGERQPSFCSQRPMPESKTLRP 128
            Q+Q P + ++  R PS    +P PE +T +P
Sbjct: 993  QEQAPPQKKKATRSPSVEEVKPSPEQQTTKP 1023


>SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 393

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 273 IRLQPIWWQSPSAFRFFASFWLLRCANVEFVVTF 172
           I ++  W ++PSA+    + W +  A + FV+ F
Sbjct: 296 IEIEGKWVENPSAYELSKAHWHIVAAKLFFVIAF 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,631
Number of Sequences: 59808
Number of extensions: 327336
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)