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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U13643-7|AAL56619.1|  182|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U13643-6|AAL56620.1|  180|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine re...    28   3.5  
Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70203-3|CAA94106.2|  219|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z66561-6|CAA91456.1|  174|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   6.2  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   6.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   6.2  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical
           protein C27C7.1 protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 28  QNTNNNYHSDFKEAKDSL 81
           Q+ N+ YHSDFK++K+SL
Sbjct: 130 QDFNSKYHSDFKKSKNSL 147


>U13643-7|AAL56619.1|  182|Caenorhabditis elegans Hypothetical
           protein T07E3.6a protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 33  YQQQLPFRFQRGERQPSFCSQRPMPESKT 119
           +  ++P RF+ G   PS+C+ R   ESKT
Sbjct: 28  FSPRVPGRFKSGRVAPSWCAGRREAESKT 56


>U13643-6|AAL56620.1|  180|Caenorhabditis elegans Hypothetical
           protein T07E3.6b protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 33  YQQQLPFRFQRGERQPSFCSQRPMPESKT 119
           +  ++P RF+ G   PS+C+ R   ESKT
Sbjct: 28  FSPRVPGRFKSGRVAPSWCAGRREAESKT 56


>AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein143 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 283 ENSNTFTTNLVAKSFRISFFCIFLASTMRKC*IRRNFLCR 164
           E S  F+  LVA +F   F CIF++S  R   ++++  CR
Sbjct: 309 EISYIFSVILVANTFSHFFICIFMSSQYR-AELKKSIYCR 347


>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 22  CFQNTNNNYHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQIDCPVICKESYDE 186
           C QN  N Y   +K    S   ALR   Q+ ++ +   +KN +D     +E+  E
Sbjct: 37  CDQNLFNEYLKTYKNGGYSQFEALRGWMQRAQKRLHLFRKNDVDIETNFREALRE 91


>Z70203-3|CAA94106.2|  219|Caenorhabditis elegans Hypothetical
           protein C05G5.3 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/85 (21%), Positives = 36/85 (42%)
 Frame = +3

Query: 18  ILFPEYQQQLPFRFQRGERQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHL 197
           I  PE  +  P + +    +     ++   ES+T      +E +++P +  RK+   Q+ 
Sbjct: 64  IFSPEVCENDPPKERASNSEKDNSEEKTESESETDEQDEDEEEEQMPQFNNRKITNTQNF 123

Query: 198 RIVEAKKMQKNEMRKDFATKLVVNV 272
              E    Q+N   K+ +    +NV
Sbjct: 124 CPDEPSTSQENPFAKELSDADKMNV 148


>Z66561-6|CAA91456.1|  174|Caenorhabditis elegans Hypothetical
           protein F08G12.4 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 327 VYWQTSLPRQLLVTRTHGVSTLMLQS 404
           V+W    PR  L+ R H V T+ +QS
Sbjct: 89  VFWPEPAPRMNLIVRNHCVITMKVQS 114


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +3

Query: 72   RQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFA 251
            +Q     Q+ +P  +T  PT+    ++L     ++   ++   IVE K +   E  K+  
Sbjct: 5332 QQAEIIEQKDVPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELL 5391

Query: 252  TKLVVNV 272
            T++ V +
Sbjct: 5392 TEVEVEL 5398



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 60   QRGERQPS-FCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236
            +  E +P+    Q+ +P  +T  PT+    ++      ++   +Q   IVE K +   E 
Sbjct: 4649 ETSEVEPAEIVEQKDVPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEE 4708

Query: 237  RKDFATKLVVNVF 275
             K+  T++ V +F
Sbjct: 4709 IKELLTEVEVELF 4721


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +3

Query: 72   RQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFA 251
            +Q     Q+ +P  +T  PT+    ++L     ++   ++   IVE K +   E  K+  
Sbjct: 5332 QQAEIIEQKDVPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELL 5391

Query: 252  TKLVVNV 272
            T++ V +
Sbjct: 5392 TEVEVEL 5398



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 60   QRGERQPS-FCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236
            +  E +P+    Q+ +P  +T  PT+    ++      ++   +Q   IVE K +   E 
Sbjct: 4649 ETSEVEPAEIVEQKDVPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEE 4708

Query: 237  RKDFATKLVVNVF 275
             K+  T++ V +F
Sbjct: 4709 IKELLTEVEVELF 4721


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +3

Query: 72   RQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFA 251
            +Q     Q+ +P  +T  PT+    ++L     ++   ++   IVE K +   E  K+  
Sbjct: 5332 QQAEIIEQKDVPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELL 5391

Query: 252  TKLVVNV 272
            T++ V +
Sbjct: 5392 TEVEVEL 5398



 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 60   QRGERQPS-FCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236
            +  E +P+    Q+ +P  +T  PT+    ++      ++   +Q   IVE K +   E 
Sbjct: 4649 ETSEVEPAEIVEQKDVPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEE 4708

Query: 237  RKDFATKLVVNVF 275
             K+  T++ V +F
Sbjct: 4709 IKELLTEVEVELF 4721


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 326 CLLADELTAPIVGYQNSRRKHLNATIHLIYG-YKV 427
           CL+   LT P   Y ++ R+H    +H++   YK+
Sbjct: 25  CLIISYLTLPFYCYVHNLRRHKEKNLHIVQSFYKI 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,973,008
Number of Sequences: 27780
Number of extensions: 252090
Number of successful extensions: 836
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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