BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS312F05f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81477-1|CAB03931.1| 271|Caenorhabditis elegans Hypothetical pr... 29 1.5 U13643-7|AAL56619.1| 182|Caenorhabditis elegans Hypothetical pr... 28 3.5 U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical pr... 28 3.5 AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine re... 28 3.5 Z81061-5|CAB02935.4| 695|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z70203-3|CAA94106.2| 219|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z66561-6|CAA91456.1| 174|Caenorhabditis elegans Hypothetical pr... 27 6.2 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 6.2 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 6.2 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 6.2 AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical... 27 6.2 >Z81477-1|CAB03931.1| 271|Caenorhabditis elegans Hypothetical protein C27C7.1 protein. Length = 271 Score = 29.5 bits (63), Expect = 1.5 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = +1 Query: 28 QNTNNNYHSDFKEAKDSL 81 Q+ N+ YHSDFK++K+SL Sbjct: 130 QDFNSKYHSDFKKSKNSL 147 >U13643-7|AAL56619.1| 182|Caenorhabditis elegans Hypothetical protein T07E3.6a protein. Length = 182 Score = 28.3 bits (60), Expect = 3.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 33 YQQQLPFRFQRGERQPSFCSQRPMPESKT 119 + ++P RF+ G PS+C+ R ESKT Sbjct: 28 FSPRVPGRFKSGRVAPSWCAGRREAESKT 56 >U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical protein T07E3.6b protein. Length = 180 Score = 28.3 bits (60), Expect = 3.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 33 YQQQLPFRFQRGERQPSFCSQRPMPESKT 119 + ++P RF+ G PS+C+ R ESKT Sbjct: 28 FSPRVPGRFKSGRVAPSWCAGRREAESKT 56 >AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine receptor, class w protein143 protein. Length = 365 Score = 28.3 bits (60), Expect = 3.5 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -2 Query: 283 ENSNTFTTNLVAKSFRISFFCIFLASTMRKC*IRRNFLCR 164 E S F+ LVA +F F CIF++S R ++++ CR Sbjct: 309 EISYIFSVILVANTFSHFFICIFMSSQYR-AELKKSIYCR 347 >Z81061-5|CAB02935.4| 695|Caenorhabditis elegans Hypothetical protein F14H8.6 protein. Length = 695 Score = 27.5 bits (58), Expect = 6.2 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = +1 Query: 22 CFQNTNNNYHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQIDCPVICKESYDE 186 C QN N Y +K S ALR Q+ ++ + +KN +D +E+ E Sbjct: 37 CDQNLFNEYLKTYKNGGYSQFEALRGWMQRAQKRLHLFRKNDVDIETNFREALRE 91 >Z70203-3|CAA94106.2| 219|Caenorhabditis elegans Hypothetical protein C05G5.3 protein. Length = 219 Score = 27.5 bits (58), Expect = 6.2 Identities = 18/85 (21%), Positives = 36/85 (42%) Frame = +3 Query: 18 ILFPEYQQQLPFRFQRGERQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHL 197 I PE + P + + + ++ ES+T +E +++P + RK+ Q+ Sbjct: 64 IFSPEVCENDPPKERASNSEKDNSEEKTESESETDEQDEDEEEEQMPQFNNRKITNTQNF 123 Query: 198 RIVEAKKMQKNEMRKDFATKLVVNV 272 E Q+N K+ + +NV Sbjct: 124 CPDEPSTSQENPFAKELSDADKMNV 148 >Z66561-6|CAA91456.1| 174|Caenorhabditis elegans Hypothetical protein F08G12.4 protein. Length = 174 Score = 27.5 bits (58), Expect = 6.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 327 VYWQTSLPRQLLVTRTHGVSTLMLQS 404 V+W PR L+ R H V T+ +QS Sbjct: 89 VFWPEPAPRMNLIVRNHCVITMKVQS 114 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 27.5 bits (58), Expect = 6.2 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = +3 Query: 72 RQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFA 251 +Q Q+ +P +T PT+ ++L ++ ++ IVE K + E K+ Sbjct: 5332 QQAEIIEQKDVPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELL 5391 Query: 252 TKLVVNV 272 T++ V + Sbjct: 5392 TEVEVEL 5398 Score = 27.1 bits (57), Expect = 8.1 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +3 Query: 60 QRGERQPS-FCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236 + E +P+ Q+ +P +T PT+ ++ ++ +Q IVE K + E Sbjct: 4649 ETSEVEPAEIVEQKDVPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEE 4708 Query: 237 RKDFATKLVVNVF 275 K+ T++ V +F Sbjct: 4709 IKELLTEVEVELF 4721 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 27.5 bits (58), Expect = 6.2 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = +3 Query: 72 RQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFA 251 +Q Q+ +P +T PT+ ++L ++ ++ IVE K + E K+ Sbjct: 5332 QQAEIIEQKDVPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELL 5391 Query: 252 TKLVVNV 272 T++ V + Sbjct: 5392 TEVEVEL 5398 Score = 27.1 bits (57), Expect = 8.1 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +3 Query: 60 QRGERQPS-FCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236 + E +P+ Q+ +P +T PT+ ++ ++ +Q IVE K + E Sbjct: 4649 ETSEVEPAEIVEQKDVPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEE 4708 Query: 237 RKDFATKLVVNVF 275 K+ T++ V +F Sbjct: 4709 IKELLTEVEVELF 4721 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 27.5 bits (58), Expect = 6.2 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = +3 Query: 72 RQPSFCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEMRKDFA 251 +Q Q+ +P +T PT+ ++L ++ ++ IVE K + E K+ Sbjct: 5332 QQAEIIEQKDVPVPETSAPTVEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELL 5391 Query: 252 TKLVVNV 272 T++ V + Sbjct: 5392 TEVEVEL 5398 Score = 27.1 bits (57), Expect = 8.1 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +3 Query: 60 QRGERQPS-FCSQRPMPESKTLRPTMSKESDRLPCYLQRKLRRIQHLRIVEAKKMQKNEM 236 + E +P+ Q+ +P +T PT+ ++ ++ +Q IVE K + E Sbjct: 4649 ETSEVEPAEIVEQKDVPVPETSAPTVEPTVEKHTPVESKEKSEVQPAEIVEQKDVTCEEE 4708 Query: 237 RKDFATKLVVNVF 275 K+ T++ V +F Sbjct: 4709 IKELLTEVEVELF 4721 >AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical protein Y102A5C.33 protein. Length = 326 Score = 27.5 bits (58), Expect = 6.2 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +2 Query: 326 CLLADELTAPIVGYQNSRRKHLNATIHLIYG-YKV 427 CL+ LT P Y ++ R+H +H++ YK+ Sbjct: 25 CLIISYLTLPFYCYVHNLRRHKEKNLHIVQSFYKI 59 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,973,008 Number of Sequences: 27780 Number of extensions: 252090 Number of successful extensions: 836 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 718 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 836 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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