Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   1.4  
At2g15535.1 68415.m01779 SLR1 binding pollen coat protein-relate...    29   1.9  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   4.4  
At1g22060.1 68414.m02759 expressed protein                             28   4.4  
At4g13990.1 68417.m02164 exostosin family protein contains Pfam ...    27   7.7  
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 27  PEYQQQLPFRFQRGERQPSFCSQRPMPESKT--LRPTMSKESDRLP 158
           P+  +  P   QR  R P F  + P P SKT   +PT  + S R P
Sbjct: 286 PQTPETRPRTAQRRGRSPEFMERSPGPRSKTPEPQPTYFEPSSRTP 331


>At2g15535.1 68415.m01779 SLR1 binding pollen coat protein-related
           contains weak similarity to SLR1 binding pollen coat
           protein [Brassica juncea] gi|7649936|dbj|BAA94096
          Length = 81

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 151 DCPVICKESYDEFNICAS*KPKRCKKTKCGRTLP 252
           DC  +C + Y   +IC + KP  C    C R  P
Sbjct: 46  DCKSLCHKKYKGGSICTTGKPNICMCLVCRRRSP 79


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 40  NNYHSDFKEAKDSLRSALRDQCQKVKRCVLQCQKNQ 147
           N+Y S F  A D   S+L  + +  ++C L+CQK +
Sbjct: 607 NHYCSYFCHALDIRSSSLDKRSESCEKCDLRCQKER 642


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 96  RPMPESKTLRPTMSKESDRLPCY---LQRKLRRIQHLRIVEAKKMQ 224
           R + ESK  R +++K+ D++ CY   L ++L   Q   +VE + ++
Sbjct: 519 RGLDESKAERDSLTKKMDQMECYYESLVQELEETQRQLLVELQSLR 564


>At4g13990.1 68417.m02164 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 521

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 64  EAKDSLRSALRDQC-QKVKRC-VLQCQKNQIDC 156
           E KDS+R  + D+C +  K+C +L C    ++C
Sbjct: 321 EYKDSVRGKIIDECLESKKQCYLLDCNYGNVNC 353


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 166 CKESYDEFNICAS*KPK-RCKKTKCGRTLPPNWL 264
           C ++Y + ++      K +C  +KCG T+PP  L
Sbjct: 403 CMKTYTDIHVTEGTVNKLKCPDSKCGETVPPGIL 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,786
Number of Sequences: 28952
Number of extensions: 221942
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)