Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28170.1 68417.m04039 hypothetical protein                          29   1.4  
At2g32880.1 68415.m04031 meprin and TRAF homology domain-contain...    29   2.5  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    27   5.8  

>At4g28170.1 68417.m04039 hypothetical protein 
          Length = 135

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 357 VTNTVDLTKWLFKRTFIISLDSISD*MLRAQM*SRDIRKF 476
           +T+ + +  W  KR+F  S  S+S    + QM S D R+F
Sbjct: 2   LTSQLKVGTWAMKRSFSTSCSSVSQVSFQLQMSSHDHRRF 41


>At2g32880.1 68415.m04031 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 318

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 109 SVTCH---QPKFGVVNFVTFDQYREKF 38
           SV CH   QP  GVV F+T  Q +E+F
Sbjct: 106 SVGCHNEKQPAQGVVKFITHTQLKERF 132


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 505 TNLIGFK*HSNFLMSRDHICARSIQSDILSN 413
           +NL  F   SN+   R  ICA S+ +DI+ N
Sbjct: 314 SNLENFTYSSNYFSGRPPICAASLLADIVVN 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,920,910
Number of Sequences: 28952
Number of extensions: 183839
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)