Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2636| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_51695| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                28   5.4  
SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     27   7.1  
SB_18976| Best HMM Match : ANF_receptor (HMM E-Value=4.7)              27   9.4  
SB_13070| Best HMM Match : ANF_receptor (HMM E-Value=4.7)              27   9.4  
SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_2636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  HLRWFPEMRRGERKAEQQVGVLWG-AGRCVCQLLFSLFPHTCTLQRILLPLHNTFYLSLV 225
           HLR      R E K    + +  G +GR +  +   L  +T    ++L+      +L  +
Sbjct: 149 HLRCAHCFGRPESKLRALLHIYGGFSGRTLLAVRSDLACYTAIFVKLLVQSRKRVHLQTI 208

Query: 226 SSVTYRTFLI 255
            S+ YRTFL+
Sbjct: 209 QSLRYRTFLL 218


>SB_51695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 179 NVSYYPYTTHFTCHLSH 229
           + SYYP+TT  T HL H
Sbjct: 53  HTSYYPFTTRHTTHLPH 69


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 210  LPVTCLISNI*DIFNTLLLASDVCMYVCNGIFEHH 314
            LP T L   + +I +TL +  +V  Y C G+FE H
Sbjct: 1747 LPDTILSKRLKNIMDTLTM--NVYNYACTGLFERH 1779


>SB_48283| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 745

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 85  RKAEQQVGVLWGAGRCVCQLLFSLFPHTCTLQRILLPLHNTFYLSLVSSVTYRTFLIR 258
           +K E   G      R +C  LF+ +P TCT    +LP  N   L   S+  + T  +R
Sbjct: 364 KKYENVAGTKSSCIRNICVFLFATYPTTCTKIIQILP-PNCVQLCFESTHAHCTSFLR 420


>SB_18976| Best HMM Match : ANF_receptor (HMM E-Value=4.7)
          Length = 226

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 246 IFNTLLLASDVCMYVCNGIFEHHFDPLQNVGLTRN 350
           ++ +L L   VC+  C+G+ E +   L  +G T+N
Sbjct: 4   LYRSLALVLCVCVLSCSGVLELNLGVLLPIGNTKN 38


>SB_13070| Best HMM Match : ANF_receptor (HMM E-Value=4.7)
          Length = 226

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 246 IFNTLLLASDVCMYVCNGIFEHHFDPLQNVGLTRN 350
           ++ +L L   VC+  C+G+ E +   L  +G T+N
Sbjct: 4   LYRSLALVLCVCVLSCSGVLELNLGVLLPIGNTKN 38


>SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 135 LSVAVQPLPTYLHIATYLTTLTQHILPVTCLI 230
           LS  V   P +LH A +  +    ILP+T L+
Sbjct: 624 LSAEVSKWPEWLHQAVFYMSTAAFILPITLLV 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,395
Number of Sequences: 59808
Number of extensions: 207786
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)