Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61040.1 68418.m07660 expressed protein                             27   7.7  
At4g35080.2 68417.m04981 high-affinity nickel-transport family p...    27   7.7  
At4g35080.1 68417.m04980 high-affinity nickel-transport family p...    27   7.7  
At2g16800.1 68415.m01926 high-affinity nickel-transport family p...    27   7.7  
At1g23080.2 68414.m02886 auxin efflux carrier protein, putative ...    27   7.7  
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ...    27   7.7  

>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 170 QVCGKRLNSN*QTQRPAPHSTPTCCSALRSPRRIS 66
           +V GKRL+     Q P+ +STP   +   SPR +S
Sbjct: 352 RVKGKRLDETESNQDPSGNSTPESGNYAVSPRELS 386


>At4g35080.2 68417.m04981 high-affinity nickel-transport family
           protein contains Pfam domain, PF03824: High-affinity
           nickel-transport protein
          Length = 336

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  LHNNKQWTHLRWFPEMRRGERKAEQQ-VGVLWGAGRCVCQLLFSL 156
           LH      HL     +  G  K E   VG LWG G    Q++F L
Sbjct: 153 LHTLSGPDHLAALAPLSIGRSKMESAAVGALWGCGHDAGQVIFGL 197


>At4g35080.1 68417.m04980 high-affinity nickel-transport family
           protein contains Pfam domain, PF03824: High-affinity
           nickel-transport protein
          Length = 365

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  LHNNKQWTHLRWFPEMRRGERKAEQQ-VGVLWGAGRCVCQLLFSL 156
           LH      HL     +  G  K E   VG LWG G    Q++F L
Sbjct: 153 LHTLSGPDHLAALAPLSIGRSKMESAAVGALWGCGHDAGQVIFGL 197


>At2g16800.1 68415.m01926 high-affinity nickel-transport family
           protein contains Pfam domain, PF03824: High-affinity
           nickel-transport protein
          Length = 372

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  LHNNKQWTHLRWFPEMRRGERKAEQQ-VGVLWGAGRCVCQLLFSL 156
           LH      HL     +  G  + E   VG LWG G    QL+F L
Sbjct: 166 LHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQLIFGL 210


>At1g23080.2 68414.m02886 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 527

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 340 NPTFCRGSK*CSKIPLQTYIHTSEANKSVLKMSYMLL 230
           NP F  G+K  SK P + + H  ++N +  K  +M +
Sbjct: 315 NPEFSTGNKTGSKAPKENHHHVGKSNSNDAKELHMFV 351


>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 619

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 340 NPTFCRGSK*CSKIPLQTYIHTSEANKSVLKMSYMLL 230
           NP F  G+K  SK P + + H  ++N +  K  +M +
Sbjct: 315 NPEFSTGNKTGSKAPKENHHHVGKSNSNDAKELHMFV 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,194,605
Number of Sequences: 28952
Number of extensions: 139571
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)