Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06670.1 68416.m00786 expressed protein                             28   3.3  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   3.3  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   3.3  
At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 / 4-coumaroyl...    28   3.3  
At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 / 4-coumaroyl...    28   3.3  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    27   7.7  

>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 77  DEDVFRSVMGVLKTCSD-DNV-ALCLKEKALRYVENVSNSRELNLIDGVSLI 226
           D D FR++MGV K C D +NV  L +    ++ +  +++S+ L  I G  LI
Sbjct: 167 DHDFFRNLMGVFKICEDLENVDGLHMIFNIVKGIILLNSSQILEKIFGDELI 218


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 433 ATPAHTGTPATEDPVPHPRLPRNHC 507
           +TP+HT TP T    P P  P  +C
Sbjct: 83  STPSHTPTPHTPSHTPTPHTPPCNC 107


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 433 ATPAHTGTPATEDPVPHPRLPRNHC 507
           +TP+HT TP T    P P  P  +C
Sbjct: 83  STPSHTPTPHTPSHTPTPHTPPCNC 107


>At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 /
           4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
           4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
           (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
          Length = 490

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 104 GVLKTCSDDNVALCLKEKALRYVENVSNSRELN-LIDGVSL 223
           GV+  C DDN ++ + E  LR+ E   ++ E + +ID V +
Sbjct: 159 GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEI 199


>At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 /
           4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
           4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
           (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
          Length = 561

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 104 GVLKTCSDDNVALCLKEKALRYVENVSNSRELN-LIDGVSL 223
           GV+  C DDN ++ + E  LR+ E   ++ E + +ID V +
Sbjct: 159 GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEI 199


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 504 MIPRKTGMRDWIFSCRSASMGRSCFNFFFLPRPSSKDRFADSMAPFGR 361
           M+PR T     +FS  S     S  NF  L    S++R     A FG+
Sbjct: 353 MLPRSTYPEKLLFSQTSVPSSNSMPNFESLQEDDSRERNISVQAKFGQ 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,544,181
Number of Sequences: 28952
Number of extensions: 216485
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)