Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312F01f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 61 5e-10
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 61 5e-10
At5g10400.1 68418.m01206 histone H3 identical to several histone... 61 5e-10
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 61 5e-10
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 61 5e-10
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 61 5e-10
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 61 5e-10
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 61 5e-10
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 60 7e-10
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 59 2e-09
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 58 4e-09
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 58 5e-09
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 52 2e-07
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 41 4e-04
At5g61350.1 68418.m07698 protein kinase family protein contains ... 27 7.7
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDIQLARRIRGERA 136
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 60.5 bits (140), Expect = 7e-10
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKDVQLARRIRGERA 136
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct: 109 NLCAIHAKRVTIMPKEIQLARRIRGERA 136
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct: 109 NLCAIHAKRVTIMPKDVQLARRIRAERA 136
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGERA 436
NLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct: 110 NLCAIHAKRVTIMSKDIQLARRIRGERA 137
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = -3
Query: 519 NLCAIHAKRVTIMPKDIQLARRIRGER 439
NLCA+HAKR TIMPKDIQLA+R+RG+R
Sbjct: 104 NLCAMHAKRSTIMPKDIQLAKRLRGDR 130
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 41.1 bits (92), Expect = 4e-04
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = -3
Query: 516 LCAIHAKRVTIMPKDIQLARRIRGE 442
LCAIHA+RVT+M KD +LARR+ G+
Sbjct: 150 LCAIHARRVTLMRKDFELARRLGGK 174
>At5g61350.1 68418.m07698 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 842
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +3
Query: 105 WKYYLITTARHNLQSHLTQIRHPW------AFSVTNEPYTILHD 218
+ +Y+ RH ++ H + HP FSVT + +LHD
Sbjct: 100 YSFYISRPGRHWIRLHFYPLNHPLYNLTNSVFSVTTDTTVLLHD 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,549,449
Number of Sequences: 28952
Number of extensions: 159871
Number of successful extensions: 242
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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