Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0690 + 5221957-5223951                                           29   3.0  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    28   4.0  
01_07_0231 + 42176598-42178117,42178232-42179753                       28   5.2  
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233...    28   5.2  
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875...    27   9.1  

>07_01_0690 + 5221957-5223951
          Length = 664

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 328 VDDQEVLIRLRKPLDEPLEGWYEI-IGVSQGKTVLCEDYVSLPDN 197
           VDD  ++     PLD P EG +E   G   G+      +VS  DN
Sbjct: 417 VDDSSMVFANIHPLDSPAEGGHEAEAGAGGGRAAPAPSWVSSLDN 461


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = -2

Query: 400  NGAKVTLWGKVTRVSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWY----EIIGVSQGKT 233
            N  ++  W +  +    +G   + V   E+L+ L++ L    E +     EI+ +++   
Sbjct: 1295 NNVQMLEWNEQLKQELQQGCEREEVLKAEILV-LQEKLSCSRESYQTSQNEIVSLTEKNE 1353

Query: 232  VLCEDYVSLPDNITANIDIDG 170
             LC++Y SL +N  A  D +G
Sbjct: 1354 TLCKEYQSLIENYNALEDENG 1374


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 126 QGSSKAANNLAKALCPSISMFAVMLSGRET*SSHSTVLPCDTPIIS 263
           Q  S A NNL+  L P +S+ A + S   + ++ S  LP D P+++
Sbjct: 97  QSLSVARNNLSGELPPGLSLLASLRSIDLSYNAFSGPLPGDVPLLA 142


>01_06_0120 +
           26622285-26622433,26623156-26623219,26623310-26623399,
           26623588-26623644,26623832-26623880,26624320-26624396,
           26624918-26624957,26625037-26625131,26625525-26625689,
           26625777-26625887,26625971-26626058,26626715-26626781,
           26626955-26627063,26627155-26627272,26628345-26628590,
           26628956-26629095,26629262-26629444,26629560-26629679,
           26629932-26629967
          Length = 667

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 361 VSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIGVSQGKTVLCED 218
           VSA +  +V     +  L+ +  P  E LE W    G+S     LCE+
Sbjct: 550 VSAIDSIWVYGNSFESFLVAVVNPNKEALESWAAANGISGDLEALCEN 597


>09_04_0532 +
           18386593-18386722,18386826-18386900,18387098-18387510,
           18387682-18387688,18387944-18388005,18388046-18388341,
           18388456-18388813,18388916-18389491,18389956-18390231
          Length = 730

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 454 PNNDEFIPYVTAGNLASKNGAKVTLWGKVTRVSASEGF 341
           P + +    +T GN A+++G    +W  V+R   S+GF
Sbjct: 113 PGSGDANVVITEGNGAAQSGRDGVIWEVVSRDRGSDGF 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,836
Number of Sequences: 37544
Number of extensions: 202812
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)