Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43397| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.76 
SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       27   7.1  
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_8506| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_43397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = -2

Query: 433 PYVTAGNLASKNGAKVTLWGKVTRVSASEGFYVKTV--DDQEVLIRLRKPLDEPLEGWYE 260
           P V A  +   +G  V   G V+ ++ S G  +K +  DD+ + + L +PLDE L+G  E
Sbjct: 4   PRVNASMMKQYSGRLVCFVGSVSEIN-STGTELKMLSSDDKMIHVVLPEPLDEALQGVVE 62

Query: 259 IIG-VSQGKTVLCEDYVS 209
           ++G V +  T+  +  +S
Sbjct: 63  VVGRVERDLTISAQRIIS 80


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 340  YVKTVDDQEVLIRLRKPLDEPLEGWYEIIGVSQGKTVLCEDYVSLPDNITANIDID 173
            YVK V   ++   +RK +D  LEG+YEII   +  ++  E  + L  +   NID+D
Sbjct: 2219 YVKLVCQMKMTGAIRKQIDSFLEGFYEII-PKRLISIFNEQELELLISGLPNIDLD 2273


>SB_8775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 346 GFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIGVSQGKTVLCEDYVSL 206
           GFY++ V       R   PLD+P+ GW     +   +  LC DY  +
Sbjct: 358 GFYLRDVAVIWAGGRTTPPLDQPVCGWMAKSALETNRKGLCSDYTRI 404


>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 268  WYEIIGVSQGKTVLCEDYVSLPDNITANIDIDGH 167
            WY++   +   T+    Y S+  N+T NI  D H
Sbjct: 1040 WYDVFSGNLNVTLYTVFYTSIEGNLTVNITDDRH 1073


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 370 VTRVSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIGVS 245
           VT ++ SEG  +K   D  + +RL +   E  E W  I+GV+
Sbjct: 704 VTNITTSEGIELK---DGFIKVRLEEMTPEFREAWGNIVGVT 742


>SB_8506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 214 HNLRTVQFYLVTRRLFHTILLVAHLKVSSNVSILLDRLRFS 336
           HNLRT    +    + H  + +  L+ S++  +L DRL F+
Sbjct: 172 HNLRTDILQVYDTDVAHLPMFIYQLRASTSKLVLTDRLLFT 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,278
Number of Sequences: 59808
Number of extensions: 251407
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)