Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264...    28   2.1  
10_08_0347 - 17032996-17033295                                         27   4.8  
09_04_0223 - 15837275-15838279                                         27   6.3  
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    27   6.3  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    27   6.3  
11_06_0130 - 20408835-20411771                                         26   8.4  
09_06_0283 + 22024779-22026134,22026181-22026714                       26   8.4  
05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102...    26   8.4  

>12_01_0343 +
           2640822-2641106,2641488-2641556,2641708-2641887,
           2642015-2642081,2643237-2644015
          Length = 459

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 218 RPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLA 57
           +P R S A  A      ++ K    RTSP    S    P  T+ R+P    ++A
Sbjct: 128 KPQRLSNATPAREKLKGDNAKRIGSRTSPRSSTSPTTEPNQTKTRRPKAQQMIA 181


>10_08_0347 - 17032996-17033295
          Length = 99

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 52  SGARTKSVCGFRRRVLVGYLCDEFPWLGDVLGAR 153
           +G    +  G   R+L GYL  EF   G VLG R
Sbjct: 22  AGGSPDAAPGAGSRLLAGYLAHEFLTAGTVLGER 55


>09_04_0223 - 15837275-15838279
          Length = 334

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 143 RTSPSQGNSSHKYPTSTRLRKPHTLLV 63
           +T+ S  +SSH +P +  L  P+ LLV
Sbjct: 2   KTASSSSSSSHGFPATASLCTPYLLLV 28


>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 203 SCAXSAHLXXXHEDGKPRAPRTSPSQGNSSH---KYPTSTRLRK 81
           SC   A +      G   + R S S+ ++S+   K+PT+T+LRK
Sbjct: 190 SCKKKAGISSDDFSGPEASTRVSRSRNHASNVNQKHPTNTKLRK 233


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 161 GKPRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVL 60
           G PRAPRT PS   S     +ST   +PH  +V+
Sbjct: 281 GTPRAPRTMPS---SHPGASSSTAPPRPHGFIVI 311


>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 30  NFVKWNTIRGQD*KCMWFSEACAG 101
           +   WNT  G    C W   AC G
Sbjct: 58  SLASWNTTSGHGQHCTWAGVACGG 81


>09_06_0283 + 22024779-22026134,22026181-22026714
          Length = 629

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   RLIININKLKLC*VEHDQGPGLKVYVVFGGVCWLGIYVMSSP-GLEMSLEHGASR 163
           +L+   N ++   V++    GLK+Y+    +C LG+    +P  LE  L+ G  R
Sbjct: 430 KLLFEANTIQGLKVQYPDPEGLKLYLHLKHMCILGVTFAHAPYMLEQVLKVGKER 484


>05_04_0213 +
           19109369-19109581,19109803-19109873,19110175-19110229,
           19110441-19110626
          Length = 174

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 98  WLGIYVMSSPGLEMSLEHGASRPH 169
           W  +Y+  +PG  MSL   +S PH
Sbjct: 8   WTNLYLQPNPGTIMSLSLFSSSPH 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,315,553
Number of Sequences: 37544
Number of extensions: 161900
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)