Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             30   0.53 
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)               29   1.2  
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               27   6.5  

>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 67  KSVCGFRRRVLVGYLCDEFPWLGDV 141
           +++ GF   V +GYL DEFP  G V
Sbjct: 314 EAIVGFEEHVFLGYLLDEFPKKGPV 338


>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
          Length = 291

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 172 FMRTGSPVLQGHLQARGTHHINTQPAHASENHIHF*SWPLIVFHLTKFQFIYIN 11
           F+ TG+ +   +  A+   H+ +     SE+HIH   +PL   HL  +   Y N
Sbjct: 105 FVATGADLSSRYRLAQFHFHVGSSDIQGSEHHIHGVKYPL-EMHLVHYNDKYPN 157


>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 155 PRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDR 48
           P +P    + GN  + YP  +RL+KP +   LA DR
Sbjct: 298 PMSPPLIITPGNDLNSYPRRSRLKKPISRNSLATDR 333


>SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
 Frame = -3

Query: 218 RPPRXSCAXSAHLXXXHEDGK-PRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRVP 42
           RP    C  S HL   H D   P APR +  Q  S+H  P       P      +P    
Sbjct: 32  RPTSPQCT-STHLTPVHLDPPHPTAPRPTSPQCTSTHLTPVHLDPPHPSAPRPTSPQCTS 90

Query: 41  LNKVSVYLY*LL 6
            N   V+L  LL
Sbjct: 91  TNLTPVHLTQLL 102


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 158 KPRAPRTSPSQGNSSHKYPTSTRLRKPHT 72
           KPR  +T  ++ ++   Y T  R  KPHT
Sbjct: 15  KPRTTKTHTTKPHNIKLYTTKPRTTKPHT 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,123,627
Number of Sequences: 59808
Number of extensions: 174606
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)