Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical p...    28   1.9  
AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-relat...    28   1.9  
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    27   5.8  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        26   7.6  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        26   7.6  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    26   7.6  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    26   7.6  
AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical ...    26   7.6  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    26   7.6  

>Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical
           protein Y48E1B.13a protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -3

Query: 257 RPP-LGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLRK 81
           +PP L K     D    R  C+ S        D + R PRT   + N  HKY        
Sbjct: 236 KPPILDKPTKLDDPAETRHDCSYSLE----EYDSQSRMPRTDAKKSNHKHKYCYEMNSNP 291

Query: 80  PHTLLVLA 57
             T+L+L+
Sbjct: 292 RGTVLILS 299


>AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-related
           protein 1A protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -3

Query: 257 RPP-LGKDMXRIDVRPPRXSCAXSAHLXXXHEDGKPRAPRTSPSQGNSSHKYPTSTRLRK 81
           +PP L K     D    R  C+ S        D + R PRT   + N  HKY        
Sbjct: 236 KPPILDKPTKLDDPAETRHDCSYSLE----EYDSQSRMPRTDAKKSNHKHKYCYEMNSNP 291

Query: 80  PHTLLVLA 57
             T+L+L+
Sbjct: 292 RGTVLILS 299


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 115 HINTQPAHASENH-IHF*SWPLIVFHLTKFQFIY 17
           H + Q    S NH +H  +WP  V+HLT++   Y
Sbjct: 440 HFDMQMFDPSWNHGVHPPAWPHDVYHLTQYPPTY 473


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 115 HINTQPAHASENH-IHF*SWPLIVFHLTKFQFIY 17
           H + Q    S NH +H  +WP  V+HLT++   Y
Sbjct: 482 HFDMQMFDPSWNHGVHPPAWPHDVYHLTQYPPTY 515


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 115 HINTQPAHASENH-IHF*SWPLIVFHLTKFQFIY 17
           H + Q    S NH +H  +WP  V+HLT++   Y
Sbjct: 482 HFDMQMFDPSWNHGVHPPAWPHDVYHLTQYPPTY 515


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 155 PRAP-RTSPSQGNSSHKYPTSTRLRKPHTLLVLAP 54
           P AP    PSQ ++S K+P+ST   K  T+ +  P
Sbjct: 405 PMAPFMMPPSQSSTSFKFPSSTDSLKTPTVPIKMP 439


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 155 PRAP-RTSPSQGNSSHKYPTSTRLRKPHTLLVLAP 54
           P AP    PSQ ++S K+P+ST   K  T+ +  P
Sbjct: 405 PMAPFMMPPSQSSTSFKFPSSTDSLKTPTVPIKMP 439


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 170 HEDGKPRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRVPLNK 33
           H+ G     +T+P       + PT  R R+P T    AP RVP+ K
Sbjct: 85  HDHGVDYDEQTTPPPPRHRGRRPTGGRGRRPPT--PQAPVRVPMGK 128


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 170 HEDGKPRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRVPLNK 33
           H+ G     +T+P       + PT  R R+P T    AP RVP+ K
Sbjct: 136 HDHGVDYDEQTTPPPPRHRGRRPTGGRGRRPPT--PQAPVRVPMGK 179


>AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.11 protein.
          Length = 487

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 167 EDGKPRAPRTSPSQGNSSHKYPTSTRLRKPH 75
           +D     PRTSPS+   S     STRL +P+
Sbjct: 380 DDTTSLLPRTSPSEDLPSAPSSRSTRLTRPY 410


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 155 PRAP-RTSPSQGNSSHKYPTSTRLRKPHTLLVLAP 54
           P AP    PSQ ++S K+P+ST   K  T+ +  P
Sbjct: 405 PMAPFMMPPSQSSTSFKFPSSTDSLKTPTVPIKMP 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,381,036
Number of Sequences: 27780
Number of extensions: 124528
Number of successful extensions: 315
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)