Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E11f
         (376 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72080.1 68414.m08332 hypothetical protein                          27   3.1  
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta...    27   4.1  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    27   5.4  
At2g43260.1 68415.m05377 F-box family protein / S locus-related ...    26   7.1  

>At1g72080.1 68414.m08332 hypothetical protein
          Length = 243

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 161 GKPRAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRVPLNK 33
           G+ R+   SPS  N   + PT+T   + H  + + P    +N+
Sbjct: 144 GRNRSRSRSPSHSNGGREPPTTTLNTEDHLTMQIEPPSTIINR 186


>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
           Lycopersicon esculentum, PATX:E325797
          Length = 595

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 152 RAPRTSPSQGNSSHKYPTSTRLRKPHTLLVLAPDRVPLNKVSVYLY 15
           R+P T+PS  N     P +   R  HTL+   P   P   ++  L+
Sbjct: 41  RSPITNPSDNNDRRNKPKTLHNRTNHTLVSSPPKLRPEMTLATALF 86


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 164 DGKPRAPRTSPSQGNSSHKYPTSTRLRK 81
           D K R+P  SP++  S  K P S R R+
Sbjct: 504 DQKSRSPSKSPARSRSKSKSPISYRRRR 531


>At2g43260.1 68415.m05377 F-box family protein / S locus-related
           weak similarity to S locus F-box (SLF)-S2 protein
           [Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 420

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 31  TLLSGTRSGARTKSVCGFRRRVLVGYLCD 117
           +LL  +R   R  S+   RRR+L  Y CD
Sbjct: 42  SLLESSRFAERHMSLQNSRRRILAAYNCD 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,854
Number of Sequences: 28952
Number of extensions: 120206
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)