Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)                   31   0.58 
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           29   3.1  
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)                 28   4.1  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)                     28   5.4  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        27   9.4  

>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
 Frame = -2

Query: 436 EECPRLVLAPFSRPPQVVFDNVIIGTTCERNLEVINPTKQPQHITLGKALP--PGLIVHI 263
           +E P+L L  F++ P+V F +V IG +    L V NP  + Q + + K LP   G  +  
Sbjct: 381 DELPKLHLTHFAQTPRVGFGSVRIGNSKTEELVVWNPNSESQTLRIEK-LPSEKGFSLDF 439

Query: 262 PG--------EWLEVEPESCNILTMVWTPNQPTAVRETLNFT-NENHRRHDVIVLLKSVV 110
            G          L VEPE   +L + W P +    RE   F   E HR   + ++  + +
Sbjct: 440 AGFIQDEGGNNVLIVEPEEEVLLPITWEPKEGGRCRELFVFKWAETHRL--LAIVYGTAI 497

Query: 109 NVKGKTNQSK 80
            V  KT + K
Sbjct: 498 EVVKKTAKKK 507


>SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)
          Length = 290

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 364 GTTCERNLEVINPTKQPQHITLGKALPPGLIVHIPGEWLEVEPESCNILTMVWTPNQ 194
           G    RN  VINPT +P  + + +   PG     PG+    E  S  ++  + + +Q
Sbjct: 206 GRVLRRNRRVINPTAEPPPVVIAQEDTPGPSSAFPGQASTAEGPSKRLIRQISSLHQ 262


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 466  TACKSEESPKEECPRLVLAPFSRPPQVVFD 377
            ++C   E P E  P +V AP   PP +V D
Sbjct: 964  SSCSDSERPSETKPAVVTAPRRSPPPLVSD 993


>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
          Length = 529

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 293 SSTTRTDCAYTRRMVGSGT 237
           S+TT+T C  TRR+ G GT
Sbjct: 490 SNTTKTKCVTTRRVAGHGT 508


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 293 SSTTRTDCAYTRRMVGSGT 237
           S+TT+T C  TRR+ G GT
Sbjct: 263 SNTTKTKCVTTRRVAGHGT 281


>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
          Length = 372

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
 Frame = -2

Query: 286 PPGLIVHIPGEWLEVEPESCNILTMVWTPNQPTAVRETLNFTNENHRRHDVIVL----LK 119
           PPG I+H  G W +V          +W      A  E  N  ++ HR  + ++      K
Sbjct: 248 PPGYIIHEAGIWSDVH--------QLWFFLPRRASHEMYNEKDDEHRATNALISCDEHFK 299

Query: 118 SV-VNVKGKTNQSKGF---KISPG 59
           S+ V   GK N + GF   K  PG
Sbjct: 300 SIHVRTIGKLNPTHGFSSLKFVPG 323


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 511  FEIETTPEHVKRARRTACKSEESPKEECPRLVLAPFSRPP 392
            F    +P   K   ++ CKSEE  + EC ++ L  +   P
Sbjct: 3284 FPTNGSPSTNKCQEKSECKSEEKSEMECDKMKLVAYEGAP 3323


>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 508 EIETTPEHVKRARRTACKSEESPKEECPRLVLAP 407
           E   TPE  K   +     EE+PKEE P++  AP
Sbjct: 216 EANKTPEEPKEDEKVT--EEETPKEETPKVEDAP 247


>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 279 PGGRALPRVI--CCGCFVGLMTSKFLS-QVVP--MITLSNTTC 392
           PG R + R+I   C CF+G+ T + +  Q++   +  +++ TC
Sbjct: 68  PGKRLIDRIIETICSCFIGVQTDEGIQLQIIKALLTAVTSNTC 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,179,314
Number of Sequences: 59808
Number of extensions: 411469
Number of successful extensions: 1183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)