Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   3.0  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    26   3.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.9  

>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 367 KY*SFDQ*YY*IKDQEQK*DAPVATFADTKTSSFLRKKFNNVND 236
           KY S  + YY  K+QE++ +  V   A + T   ++KK + VN+
Sbjct: 530 KYESKQRTYYSQKEQEEEIEQEVLFDASSDTELAIQKKEDEVNE 573


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 354 SINNTTRLRIRNKNKTLQWPRLQTRKHLHFLEKSLIMLTTSVYYKP*YLNIKFNYH 187
           +I +   L ++NKN T+    ++    LHF+   L+ L  S Y  P    +  +YH
Sbjct: 124 NIRSIKSLSLKNKNWTII-SIIEIPIKLHFILNVLLFLKFSEYMLPLLGRVHLSYH 178


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 198  TLYLSIKVYNKLKSLTLLNFFLRNEDVFVSANVATG 305
            +LY + K +NK+++    + +  N+ VF+ A   +G
Sbjct: 1357 SLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSG 1392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,944
Number of Sequences: 5004
Number of extensions: 37683
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)