Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_28419| Best HMM Match : RNA_pol_Rpb1_2 (HMM E-Value=1.2)            31   0.76 
SB_12437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_50011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = -3

Query: 420 SGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPR 292
           SG R  HF   HN L    +  S   TT    RNKN TL   R
Sbjct: 63  SGTRTTHFRDAHNTLQGQELHTSETRTT--HFRNKNYTLSETR 103



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -3

Query: 423 LSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQT--RKHLHFLEKSL 250
           LS  R  HFS  HN L       S   TT    R+ + T Q   L T   +  HF +K+ 
Sbjct: 99  LSETRTTHFSDAHNTLQRRAQHTSETRTT--HFRDAHNTFQGQELHTSETRTTHFRDKNY 156

Query: 249 IMLTT 235
            +  T
Sbjct: 157 TLSET 161



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -3

Query: 423 LSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQ 301
           LS  R  HFS  HN  TL       + T +   RN   TLQ
Sbjct: 158 LSETRTTHFSDAHN--TLQRRAQHTSGTRKTHFRNAQNTLQ 196


>SB_28419| Best HMM Match : RNA_pol_Rpb1_2 (HMM E-Value=1.2)
          Length = 295

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 408 DQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRKHLHFLEKSL 250
           D+    YHN LTL  + AS         R     L   ++QT+K  + LE  +
Sbjct: 185 DKQVEKYHNQLTLKEVAASSFRNESDESRTDLYNLMTHKIQTQKQYYVLEDKI 237


>SB_12437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
 Frame = -3

Query: 411 RDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRLQTRKHLHFL--EKSLIMLT 238
           +D H     N  T+    + +NNT ++   +  + ++ P  QT K L  L  +++    T
Sbjct: 59  KDNHLRKIFNRNTIKISYSCMNNTKQIIDNHNKRIIKSPLRQTNKRLSALSSDQASFDQT 118

Query: 237 TSVYYK---P*YLNIKFNYHCKIYVSRSFRQRKNIM 139
              Y K       N    Y      +R  R+R NI+
Sbjct: 119 APPYQKALDDSGYNYTLRYDPNTVTNRKTRKRNNIL 154


>SB_50011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 459 CYIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKN 313
           CY  N +P   K++  R  HFSS    +TL  +           I NKN
Sbjct: 108 CYFLNEQPDDLKIADCRICHFSSILRFMTLLMLVKPQQIEVSFHINNKN 156


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 189  GN*TLYLSIKVYNKLKSLTLLNFFLRNEDVFVSANVATGASYFC 320
            GN  LYL  K +   +  +  N  +RNED+  SAN       FC
Sbjct: 5238 GNEDLYLK-KFHKPKRVFSDANIPMRNEDIVSSANATDKYEPFC 5280


>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 447 NLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTR 334
           N  P+T++ + +   H ++ HN+LT +    S+NNTTR
Sbjct: 102 NSLPNTTRHNSL---HNTTRHNSLTNTTRHNSLNNTTR 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,287
Number of Sequences: 59808
Number of extensions: 233638
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)