Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312E06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    31   0.36 
At5g27960.1 68418.m03367 MADS-box protein (AGL90)                      31   0.62 
At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains inter...    31   0.62 
At3g25420.1 68416.m03161 serine carboxypeptidase S10 family prot...    29   1.4  
At5g60880.1 68418.m07637 expressed protein  ; expression support...    28   3.3  
At5g09720.1 68418.m01126 magnesium transporter CorA-like family ...    28   4.4  
At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat...    27   7.7  

>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 459 CYIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRI 325
           C+   L+P++S     + ++ +  HNN T S++ +  +N TRL +
Sbjct: 75  CFTGTLKPNSSLFELHQLRYLNLSHNNFTSSSLPSEFSNLTRLEV 119


>At5g27960.1 68418.m03367 MADS-box protein (AGL90)
          Length = 320

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 154 EKEYYGINLKCHLNIKSHQYKN 89
           ++E+Y INL  +LN+ S+QY N
Sbjct: 237 QREFYNINLNLNLNLNSNQYLN 258


>At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains interpro
           domain: IPR002100 transcriptor factor, MADS box;
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain)
          Length = 327

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 154 EKEYYGINLKCHLNIKSHQYKN 89
           ++E+Y INL  +LN+ S+QY N
Sbjct: 239 QREFYNINLNLNLNLNSNQYLN 260


>At3g25420.1 68416.m03161 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) from [Oryza sativa]
          Length = 505

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 492 NIKCVFFFFVQCYIPNLEPSTSKLSGMRDQ-HFSSYHNNLTLSNIRASI 349
           +I+ + F  +   I N E  +S L    D      YH NLTLS  RA I
Sbjct: 375 SIQFIIFLSISISIGNWELCSSNLEYRHDTGSMIEYHRNLTLSGFRALI 423


>At5g60880.1 68418.m07637 expressed protein  ; expression supported
           by MPSS
          Length = 262

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -3

Query: 468 FVQCYIPNLEPSTSKLSGMRDQHFSSYHNNLTLSNIRASINNTTRLRIRNKNKTLQWPRL 289
           +  C++    P      G  +   ++ +NNLT   I+  I +T + R   K  +L  P  
Sbjct: 18  WASCFLACKIPLDGDEDGANNNGNTTNNNNLTFKRIKRKIKSTKKKRSERK-LSLSPP-- 74

Query: 288 QTRKHLHFLEKSLIMLTTS 232
            TR H   L  S +  TTS
Sbjct: 75  GTRHHHLHLRSSSVSPTTS 93


>At5g09720.1 68418.m01126 magnesium transporter CorA-like family
           protein (MRS2-8) contains Pfam profile PF01544:
           CorA-like Mg2+ transporter protein
          Length = 397

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -2

Query: 265 LRKKFNNVNDFSLL*TLILKYKV*LPLQNICI*VLSSEKEYYGINLKCHLNIKSHQYKNI 86
           LR+  +   DF     L +++++ L   +IC+ V S      G+N+    NIK H +K +
Sbjct: 316 LREYVDETEDF-----LNIQFEIILTAGSICVSVYSVVVGILGMNIPFPWNIKKHMFKWV 370

Query: 85  YS 80
            S
Sbjct: 371 VS 372


>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069
          Length = 485

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 372 TSGCCGNSKNVDHACRSA*MSKVRDWECSIERKKKIHIL 488
           T  C   S     AC++   +K++D EC  + K++I I+
Sbjct: 42  TRKCVEKSTGKTFACKTILKTKLKDEECEEDVKREIRIM 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,699,680
Number of Sequences: 28952
Number of extensions: 169590
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)