Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34491| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 31 0.76
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 31 0.76
SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 29 3.1
SB_46366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16506| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66) 27 9.4
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8) 27 9.4
>SB_34491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 382 YPAKSLYPAGVKTIIVGYDLCPAVTLAEVVNQIQNAARYI 501
YPA S AG + ++ YDL P VTL E+V Q + A ++I
Sbjct: 19 YPAVS---AGAVSAVIDYDLLPTVTLDEIVAQTKEALQFI 55
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 218 LSAVTRLMCKLRRCSGVYNRFDHSTGVYSLSKSTNSMVTVP-CIFQSTQRLKNI 60
++A + C+L + + FD++ ++SL S+N + +P +F+ +KN+
Sbjct: 2 VNATVDVKCRLTNLTELRKHFDNTDRIHSLDLSSNQLKIIPEFVFRGFSNVKNL 55
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.7 bits (66), Expect = 0.76
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +2
Query: 134 NTHRCCGRTGYIPRSIASTCTSTL*QQRAK*PQITFHTNWRLSTDQRPDRSWTFSVPTS- 310
NT R R + RS+ ++ ++L P+I+ T W+ S P S S+ TS
Sbjct: 183 NTSRKTSRKTSLKRSLKTSTKTSLKTNPTTSPEISLKTRWKTSRKTSPKTSLKTSLKTSL 242
Query: 311 ----RMNLQFSCSFTVDTGRTCLVK 373
+ +L+ S +++T R +K
Sbjct: 243 KTSLKASLKTSLKTSLETSRKTSLK 267
>SB_8608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 286 LDIFGTDLPNES-PILVFIHGG 348
LDI+ ++ N S P++VFIHGG
Sbjct: 102 LDIYAPNITNSSIPVMVFIHGG 123
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 286 LDIFGTDLPNES-PILVFIHGG 348
LD++ ++ N S P++VFIHGG
Sbjct: 103 LDVYAPNITNSSLPVMVFIHGG 124
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 348 STVNEHENWRFIREVGTENVQLLSGR*SVLNLQFVW 241
+T+ H W+ IR T N ++GR + LN+ F W
Sbjct: 51 TTMAPHSCWKTIRPTPTINGFRMAGRRNSLNVSFSW 86
>SB_46366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 78 STLKDTGDGHHGICGFGKRIHTGAVVEPVIYPGAS 182
S ++ G+ ICG +HTG++ + V +PGA+
Sbjct: 80 SAQQNCGNDVDKICGDRCDVHTGSIAQLVKFPGAN 114
>SB_16506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 516 LSVFEDVSRSVLYLIDDLSKRDRGTEIITNNYCLNAG 406
L + +D + +LY +D R RG I + Y +N G
Sbjct: 55 LDMQDDWEKGMLYTLDTQDDRGRGMLYILDEYVINTG 91
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 203 RLMCKLRRC--SGVYNRFDHSTGVYSLSKSTNSMVTVPCIFQSTQR 72
R + + +RC GVY+ S GVYS SK + V+ P + TQR
Sbjct: 559 RCLLREQRCVRKGVYSE---SKGVYSESKGAYAKVSTPRVKVRTQR 601
>SB_33349| Best HMM Match : RNA_helicase (HMM E-Value=0.66)
Length = 378
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -1
Query: 281 CPGVDPYSISNLCGTLFVAISLSAVTRLMCKLRRCSGVYNRFDHSTGVYSLSKSTNSMVT 102
CPG + Y + +C T + + R+ C C G YN D S N+M
Sbjct: 280 CPG-EYYKMDRVCNTNPCPGEYNKMDRV-CNTNPCPGEYNNMDRVCNTNPCSGEYNNMKR 337
Query: 101 V 99
V
Sbjct: 338 V 338
>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
Length = 279
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 375 YFTRHVRPVSTVNEH 331
YF+RH RPV+T N H
Sbjct: 63 YFSRHYRPVATSNFH 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,005,801
Number of Sequences: 59808
Number of extensions: 426227
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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