Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312E04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22235.1 68417.m03217 expressed protein 30 1.1
At1g49660.1 68414.m05569 expressed protein 30 1.1
At5g15860.2 68418.m01856 expressed protein 29 2.5
At5g15860.1 68418.m01855 expressed protein 29 2.5
At1g49640.1 68414.m05567 hypothetical protein similar to PrMC3 [... 29 2.5
At5g38260.1 68418.m04612 serine/threonine protein kinase, putati... 28 3.3
At5g15680.1 68418.m01834 expressed protein 28 4.4
At1g49650.1 68414.m05568 cell death associated protein-related s... 25 5.2
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 27 5.8
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 27 7.7
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 27 7.7
At3g21200.1 68416.m02679 expressed protein 27 7.7
>At4g22235.1 68417.m03217 expressed protein
Length = 91
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = -3
Query: 501 DVSRSVLYLIDDLSKRDRGTEIITNNY----CLNAGGVEGFCW 385
D+ + + L D +S D + + Y CLN GG +G CW
Sbjct: 32 DLRKGLCRLADTISTCDVPCRAVDSKYHGGECLNVGGGQGICW 74
>At1g49660.1 68414.m05569 expressed protein
Length = 319
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 313 NESPILVFIHGGYW---PDVSREISRYPAKSLYPAGVKTIIVGYDLCPAVTLAEVVNQIQ 483
N+ P+L++IHGG W S Y + + A + V Y P + +
Sbjct: 70 NKLPLLIYIHGGAWIIESPFSPLYHNYLTEVVKSANCLAVSVQYRRAPEDPVPAAYEDVW 129
Query: 484 NAARYIFEYA 513
+A ++IF ++
Sbjct: 130 SAIQWIFAHS 139
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 256 IEYGSTPGQKLDIF-GTDLPNESPILVFIHGGYW 354
I YG P +LD++ ++ P++VF+ GG W
Sbjct: 133 IVYGDQPRNRLDLYLPSNNDGLKPVVVFVTGGAW 166
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 256 IEYGSTPGQKLDIF-GTDLPNESPILVFIHGGYW 354
I YG P +LD++ ++ P++VF+ GG W
Sbjct: 133 IVYGDQPRNRLDLYLPSNNDGLKPVVVFVTGGAW 166
>At1g49640.1 68414.m05567 hypothetical protein similar to PrMC3
[Pinus radiata] GI:5487873
Length = 315
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = +1
Query: 244 HKLEIE-YGSTPGQKLDIFGTDLPNESPILVFIHGGYW---PDVSREISRYPAKSLYPAG 411
H L + + +KLD G N+ P+L++ HGG + S Y + + A
Sbjct: 52 HNLSVRMFLPNKSRKLDTAG----NKIPLLIYFHGGAYIIQSPFSPVYHNYLTEVVITAN 107
Query: 412 VKTIIVGYDLCPAVTLAEVVNQIQNAARYIFEYAE 516
+ V Y L P + + +A ++IF +++
Sbjct: 108 CLAVSVQYRLAPEHPVPAAYDDSWSAIQWIFSHSD 142
>At5g38260.1 68418.m04612 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 638
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 287 SFCPGVDPYSISNLCGTLFVAISLSAVTRLMCKLRR--CSGVYNRFDHSTGVYSLSKSTN 114
+FCP V + ++ LC +SL + + SG+Y R H + VYS
Sbjct: 455 TFCPKVSDFGLAKLCEKRESILSLLDARGTIGYIAPEVFSGMYGRVSHKSDVYSYGMLVL 514
Query: 113 SMV 105
M+
Sbjct: 515 EMI 517
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 513 SVFEDVSRSVLYLIDDLSKRDRGTEII 433
S+F+ V + + YLI+++ + D+ TEII
Sbjct: 491 SLFQSVLKCIPYLIEEVGRSDKITEII 517
>At1g49650.1 68414.m05568 cell death associated protein-related
similar to PrMC3 [Pinus radiata] GI:5487873; weak
similarity to cell death associated protein [Nicotiana
tabacum] GI:7417008, hsr203J [Nicotiana tabacum]
GI:22830761
Length = 374
Score = 25.4 bits (53), Expect(2) = 5.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 313 NESPILVFIHGGYW 354
N+ P+L++ HGG W
Sbjct: 126 NKLPLLIYFHGGAW 139
Score = 20.6 bits (41), Expect(2) = 5.2
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +1
Query: 163 LYTPEHRLNLHINLVTAESEIATNN 237
+Y+P H L++ + L +++A N
Sbjct: 102 VYSPGHNLSVRLFLPHKSTQLAAGN 126
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 256 IEYGSTPGQKLDIFGTDLPNE-SPILVFIHGGYW 354
I YG P +LD++ + P++VF+ GG W
Sbjct: 128 IVYGGHPRNRLDLYIPPTSDGLKPVVVFVTGGAW 161
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 144 GAVVEPVIYPGASPQLAHQPCNSRERN-SHK*RSTQIGD*VRINARTEAGHFRYRPPE*I 320
G V E + PQ + +P ++ E N S RS G R+N +EAG+ R PE
Sbjct: 24 GEVKEASANEASLPQ-SPEPVSASEANPSPSRRSRGRGKKRRLNNESEAGNQRTSSPE-R 81
Query: 321 SNSRVH 338
S SR+H
Sbjct: 82 SRSRLH 87
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 96 GDGHHGICGFGKRIHTGAVVE-PVIYPGASPQLAH 197
G G HG G+G+++ TG +E P+ P + H
Sbjct: 327 GRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNH 361
>At3g21200.1 68416.m02679 expressed protein
Length = 317
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 124 LEREYTPVLWSNRLYTPEHRLNLHINL 204
++++ TPVL NR +P+ R LH+ L
Sbjct: 95 VDKDGTPVLCLNRSVSPDKRSALHVQL 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,341,197
Number of Sequences: 28952
Number of extensions: 285314
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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