Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil...    29   1.9  
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    27   5.8  
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi...    27   7.7  
At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family pr...    27   7.7  

>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
           to high affinity calcium antiporter CAX1 [Arabidopsis
           thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
           (CaCA) Family member PMID:11500563; non-consensus
           AT-acceptor splice site at intron 1
          Length = 459

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 114 SDFLRTLLLLASYIFLFRCIFERHFRQPQDVKINL 218
           S +++ L+LL  Y+ +  C F     QP D+ + L
Sbjct: 413 SHYMKGLVLLLCYVIIAACFFVDQIPQPNDLDVGL 447


>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 120 FLRTLLLLASYIFLFRCIFERHFRQPQDVKI 212
           F+ +  LL  Y+F F C++ +  ++ +D+ I
Sbjct: 195 FVFSTTLLCVYVFAFCCVYIKKIKESEDISI 225


>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
           protein glutamine-rich tetratricopeptide repeat (TPR)
           containing protein (SGT) - Rattus
           norvegicus,PID:e1285298 (SP|O70593); contains Pfam
           profile PF00515 TPR Domain
          Length = 426

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 50  PVRGGNKYVPNNFSLLISLDRVGFFKNVAFISF 148
           P  GG + +P+ FS+ ++ D +  F N+A  +F
Sbjct: 312 PEMGGGQGIPSQFSMPVNPDLMSMFMNMAGNTF 344


>At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 264

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 366 HSQKTLKFLIHFFRFASADPFAVSLRVNPIIDCFV 470
           H+ K  K +   F F S DPF+ S   N ++D ++
Sbjct: 69  HTPKHQKLIDSSFHFNSHDPFSPSPESNYLLDSYI 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,006
Number of Sequences: 28952
Number of extensions: 188415
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)