Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312D04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 123 6e-29
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 54 4e-08
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 51 5e-07
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 48 3e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 48 4e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 48 4e-06
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 47 9e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 45 3e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 45 4e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 45 4e-05
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 44 8e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 44 8e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila... 42 3e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 42 3e-04
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 41 4e-04
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 41 4e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 41 4e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 41 4e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 41 4e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 40 8e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 40 8e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 8e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.001
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 40 0.001
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.002
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.002
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 39 0.002
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 39 0.002
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.003
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.003
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.005
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 38 0.005
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 38 0.005
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.007
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 37 0.009
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 37 0.009
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 37 0.009
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 37 0.009
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.009
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 36 0.012
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 36 0.012
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 36 0.012
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 36 0.012
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.012
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 36 0.017
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 36 0.017
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.017
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.017
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.017
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.017
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.017
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.017
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 36 0.022
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 36 0.022
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.022
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.022
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.022
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.022
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.022
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 35 0.029
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 35 0.029
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.029
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 35 0.029
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 35 0.029
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.038
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 35 0.038
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 35 0.038
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.038
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.038
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.038
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.038
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 34 0.050
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 34 0.050
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 34 0.050
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 34 0.050
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.050
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 34 0.050
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 34 0.067
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 34 0.067
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.088
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 33 0.088
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 33 0.088
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.088
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.088
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.088
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 33 0.12
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 33 0.12
At3g12480.1 68416.m01553 transcription factor, putative 33 0.12
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 33 0.12
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 33 0.12
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.12
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.12
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.12
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.12
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 33 0.15
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.15
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.15
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 33 0.15
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.15
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.15
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 33 0.15
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 33 0.15
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 33 0.15
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.20
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.20
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.20
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 32 0.20
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 32 0.20
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.20
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.20
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 32 0.20
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 32 0.27
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 32 0.27
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.27
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 32 0.27
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 32 0.27
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.27
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 32 0.27
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 32 0.27
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 32 0.27
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 31 0.36
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.36
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.36
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 31 0.36
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 31 0.36
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.36
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.36
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 31 0.36
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.36
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 0.47
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 0.47
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 31 0.47
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 0.47
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 0.47
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr... 31 0.47
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 0.47
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 31 0.47
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 31 0.62
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.62
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 31 0.62
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 30 0.82
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 30 0.82
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 0.82
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 30 1.1
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 30 1.1
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 30 1.1
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 29 1.4
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 29 1.4
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 29 1.4
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 1.9
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 1.9
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 29 1.9
At1g09890.1 68414.m01113 expressed protein ; expression supporte... 29 1.9
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 29 2.5
At2g09910.1 68415.m01029 hypothetical protein 29 2.5
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 2.5
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 28 3.3
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 28 3.3
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ... 28 3.3
At5g64670.1 68418.m08127 ribosomal protein L15 family protein 28 4.4
At5g60030.1 68418.m07527 expressed protein 28 4.4
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 28 4.4
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 28 4.4
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 28 4.4
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 4.4
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 28 4.4
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 28 4.4
At5g63180.1 68418.m07932 pectate lyase family protein similar to... 27 5.8
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 27 5.8
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro... 27 5.8
At3g62490.1 68416.m07021 expressed protein hypothetical proteins... 27 5.8
At3g61040.2 68416.m06831 cytochrome P450 family protein similar ... 27 5.8
At3g61040.1 68416.m06830 cytochrome P450 family protein similar ... 27 5.8
At2g17740.1 68415.m02055 DC1 domain-containing protein 27 5.8
At1g20220.1 68414.m02525 expressed protein 27 5.8
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide... 27 7.7
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 27 7.7
At5g08660.1 68418.m01031 expressed protein contains Pfam domain ... 27 7.7
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 27 7.7
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 27 7.7
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 7.7
At1g15830.1 68414.m01900 expressed protein 27 7.7
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 27 7.7
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 123 bits (297), Expect = 6e-29
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 8/132 (6%)
Frame = +2
Query: 146 DVLDIENSEEFEVDEDGEQGIARLK--------EKARKRKGRGFGNEAGGGSAAERGNRG 301
D++D E + D G RLK E A+K KGRGF E +R
Sbjct: 17 DLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGESAKKTKGRGFREEKDSDRQRRLSSRD 76
Query: 302 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 481
++SL G G PGPQRSVEGWI+ VS VHEE QEEDI N F +FGEIKN++LNLDRR+
Sbjct: 77 -FESL---GSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRS 132
Query: 482 GFLKGYALVEYE 517
G++KGYAL+EYE
Sbjct: 133 GYVKGYALIEYE 144
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +2
Query: 293 NRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD 472
N R+ L+P+ +S TP ++ LFVS + + E ++ F++FGE+ + + D
Sbjct: 31 NASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTD 90
Query: 473 RRTGFLKGYALVEYET 520
R +G+ KG+ V Y T
Sbjct: 91 RVSGYSKGFGFVRYAT 106
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 50.8 bits (116), Expect = 5e-07
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +2
Query: 221 EKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHE 397
+KA + GR G E A ERG RG + P+ + G E I FV
Sbjct: 352 QKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKI-FVKGFDA 410
Query: 398 EAQEEDIQN----QFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
E+DI+N FS GEIKN+ + +DR TG KG A +E+
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 338 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
TP + LF +N+ + D++N F E GE+ ++ + +R G +G+ VE+
Sbjct: 287 TPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 242 GRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 346
GRG G GG G RGR+ S G G G
Sbjct: 492 GRGNGRFGSGGGRGRDGGRGRFGSGGGRGRDGGRG 526
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFVS ++ E+ E I+ +F +G IK +HL D+ T KGYA +EY
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Frame = +2
Query: 239 KGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDI 418
+G G+G+E GGG ++R G S SG+ S G L+V N+ + +
Sbjct: 206 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 265
Query: 419 QNQFSEFGEIKNIHLNLDRRTGFLKGYALV 508
+N F+E G++ + DR +G KG+ V
Sbjct: 266 ENLFNEQGKVVEARVIYDRDSGRSKGFGFV 295
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Frame = +2
Query: 239 KGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDI 418
+G G+G+E GGG ++R G S SG+ S G L+V N+ + +
Sbjct: 214 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 273
Query: 419 QNQFSEFGEIKNIHLNLDRRTGFLKGYALV 508
+N F+E G++ + DR +G KG+ V
Sbjct: 274 ENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 46.8 bits (106), Expect = 9e-06
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Frame = +2
Query: 137 NMADVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSL 316
N++D SE+ DE G+ + + + R F + G A G D++
Sbjct: 181 NLSDSESDNESEDSSEDEAGDDD-GKAETDGQDADIRYFPID-GDVEAGGVGKDDDGDAM 238
Query: 317 APEGDSGTPGPQRSVEGWIL-----FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 481
EGD ++V +L FV N+ A EE++ FS FG+I +HL LD+ T
Sbjct: 239 EVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKET 298
Query: 482 GFLKGYALVEY 514
+G A + Y
Sbjct: 299 KRSRGIAYILY 309
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +2
Query: 290 GNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 469
G RGR S +P G G G R + +L V N+ + ++ED++ F +FG +K+I+L
Sbjct: 15 GRRGR--SPSPRGRYG--GRSRDLPTSLL-VRNLRHDCRQEDLRKSFEQFGPVKDIYLPR 69
Query: 470 DRRTGFLKGYALVEY 514
D TG +G+ V++
Sbjct: 70 DYYTGDPRGFGFVQF 84
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/75 (33%), Positives = 42/75 (56%)
Frame = +2
Query: 290 GNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 469
G RGR S +P G G G + S L V N+ + ++ED++ F +FG +K+I+L
Sbjct: 15 GRRGR--SPSPRGRFG--GSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPR 70
Query: 470 DRRTGFLKGYALVEY 514
D TG +G+ +++
Sbjct: 71 DYYTGDPRGFGFIQF 85
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/76 (36%), Positives = 36/76 (47%)
Frame = +2
Query: 293 NRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD 472
N G YD P GDS G LFV + E+ ++ S++G IKN+ L
Sbjct: 46 NAGLYD---PSGDSKAVGDPYCT----LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRH 98
Query: 473 RRTGFLKGYALVEYET 520
TG +GY VEYET
Sbjct: 99 IVTGASRGYGFVEYET 114
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +2
Query: 269 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
G S A RGR P + +P + E +L V ++ E ++ F FGE+
Sbjct: 65 GKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEV 124
Query: 449 KNIHLNLDRRTGFLKGYALVEYE 517
++ + +DR +G+ VE++
Sbjct: 125 IHVEIAMDRAVNLPRGHGYVEFK 147
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +2
Query: 269 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
G S A RGR P + +P + E +L V ++ E ++ F FGE+
Sbjct: 65 GKSPAGPARRGRSPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEV 124
Query: 449 KNIHLNLDRRTGFLKGYALVEYE 517
++ + +DR +G+ VE++
Sbjct: 125 IHVEIAMDRAVNLPRGHGYVEFK 147
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 170 EEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPE-GDSGTPG 346
+ F + G + LK+ A G G + G + N G S P G + T
Sbjct: 417 QNFLAELGGTVPESSLKQSATLALGPG----SSGSNPPWANNAGNGASAHPGLGSTPTKP 472
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
P + + L++ + +++ + N FS FGEI + DR TG KGY V+Y
Sbjct: 473 PSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 41.9 bits (94), Expect = 3e-04
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 170 EEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPE-GDSGTPG 346
+ F + G + LK+ A G G + G + N G S P G + T
Sbjct: 417 QNFLAELGGTVPESSLKQSATLALGPG----SSGSNPPWANNAGNGASAHPGLGSTPTKP 472
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
P + + L++ + +++ + N FS FGEI + DR TG KGY V+Y
Sbjct: 473 PSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 335 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G GP + + L V N+ +D+ F+++G++ ++ + DRRTG +G+A V Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 515 E 517
+
Sbjct: 65 K 65
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 335 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G GP + + L V N+ +D+ F+++G++ ++ + DRRTG +G+A V Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 515 E 517
+
Sbjct: 65 K 65
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 41.1 bits (92), Expect = 4e-04
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Frame = +2
Query: 191 DGEQGIARLKEKARKRKGRGFGN--EAGGGSAAERGNRGRYDS------LAPEGDSGTPG 346
D E+ I L + K KG GF G A + + D LA G+ GT
Sbjct: 100 DLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGS 159
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+ ++V+NV + + + N F +G+++ L D+ TG +G+AL Y+T
Sbjct: 160 QIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKT 217
Score = 33.5 bits (73), Expect = 0.088
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + E +++ FS +G+++ + LD+ TG KGY V +
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 41.1 bits (92), Expect = 4e-04
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Frame = +2
Query: 191 DGEQGIARLKEKARKRKGRGFGN--EAGGGSAAERGNRGRYDS------LAPEGDSGTPG 346
D E+ I L + K KG GF G A + + D LA G+ GT
Sbjct: 100 DLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGS 159
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+ ++V+NV + + + N F +G+++ L D+ TG +G+AL Y+T
Sbjct: 160 QIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKT 217
Score = 33.5 bits (73), Expect = 0.088
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + E +++ FS +G+++ + LD+ TG KGY V +
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
++VSNV + + + FS FGEI+ L LD+ TG KG+AL Y +
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + + + + + + F ++GEI++ +D+ +G KGY + +++
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 40.3 bits (90), Expect = 8e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+F+ + + EED+++ E GEI + L DR +G KGYA V ++T
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKT 166
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 290 GNRGRYDSLAPE----GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNI 457
G RGR P G G G +R L V N+ + + E+++ F FG ++++
Sbjct: 17 GGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDV 76
Query: 458 HLNLDRRTGFLKGYALVEY 514
++ D +G +G+A VE+
Sbjct: 77 YIPRDYYSGQPRGFAFVEF 95
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 40.3 bits (90), Expect = 8e-04
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +2
Query: 311 SLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
S AP G SG P +S L+VSN+ DI FS FG++ + + DR T
Sbjct: 42 SSAPGGGSGGLAPSKST----LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQS 97
Query: 491 KGYALVEY 514
+G A V Y
Sbjct: 98 RGVAFVLY 105
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
++VSNV E + + FS+FGEI+ L LD+ TG KG+ L Y++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + + + E + F ++GEI++ D+ +G KGY + Y++
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
++VSNV E + + FS+FGEI+ L LD+ TG KG+ L Y++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + + + E + F ++GEI++ D+ +G KGY + Y++
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
++VSNV E + + FS+FGEI+ L LD+ TG KG+ L Y++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + + + E + F ++GEI++ D+ +G KGY + Y++
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 362 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
EG +FV + E + D++ FS FG+I + + L+R TG +G+ + +
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 326 GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 505
G T P +FV+NVH A ++ + F++FGE+ + D TG G A
Sbjct: 502 GTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAY 561
Query: 506 VEY 514
+E+
Sbjct: 562 IEF 564
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV +V A EE+I+ F + G + + L D+RTG +G V+Y T
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD-----RRTGFLK 493
LFV +++++A E++++ F +FG +++++L D R GF+K
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVK 257
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV +V A EE+I+ F + G + + L D+RTG +G V+Y T
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLD-----RRTGFLK 493
LFV +++++A E++++ F +FG +++++L D R GF+K
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVK 257
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
F S++ E+ ++++++ FS+ GE+ +H+ DR TG +G+A ++
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
Score = 34.3 bits (75), Expect = 0.050
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 338 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
TP Q LF N+ + DI+N F E GE+ ++ L+ G KGY +E+
Sbjct: 374 TPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS-SFDDGSFKGYGHIEF 431
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FV N+ +A EE ++ E G + + L DR TG KGY EY+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYK 58
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
++V + + E D+ FS++GEI +++L D+ TG KG+A + YE
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYE 85
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 317 APEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKG 496
A G G GP S L+V N+H E+D++ F FG ++ + + D TG KG
Sbjct: 269 AAAGAGGMLGPY-SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKG 326
Query: 497 YALVEY 514
+ V++
Sbjct: 327 FGFVQF 332
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 308 DSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGF 487
D + PE D P+R +F + A E D+ FS G+++++ + +DR +
Sbjct: 169 DKVEPEAD-----PERDQR--TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRR 221
Query: 488 LKGYALVEY 514
+G VE+
Sbjct: 222 SRGIGYVEF 230
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 335 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G+PGP S + +FV + E + + F++FG I ++ + D RT +G+ + Y
Sbjct: 25 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 81
Query: 515 ET 520
++
Sbjct: 82 DS 83
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 335 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G+PGP S + +FV + E + + F++FG I ++ + D RT +G+ + Y
Sbjct: 98 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 154
Query: 515 ET 520
++
Sbjct: 155 DS 156
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 359 VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+E LF+ + E E+ +++ F FGE+ + DR TG +G+ V +
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +2
Query: 335 GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G+PGP S + +FV + E + + F++FG I ++ + D RT +G+ + Y
Sbjct: 98 GSPGPSNSKK---IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY 154
Query: 515 ET 520
++
Sbjct: 155 DS 156
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 359 VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+E LF+ + E E+ +++ F FGE+ + DR TG +G+ V +
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.5 bits (83), Expect = 0.005
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L+V N+H E ++ F FG ++ + L LD TG KG+ +++
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 185 DEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
+ GE+G + +R +K RG G E GGG R R
Sbjct: 42 ERQGEEGGEEERVSSRSKKSRGDGEENGGGKRDRERERHR 81
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +2
Query: 164 NSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAE--RGNRGRY-DSLAPEGDS 334
+S++ + +++ E+ ++K + +K G ++ A + + G+ DS E +
Sbjct: 579 SSQKRKAEQNVEEESLAKRQKRKSQKEVDLGGQSATVPATKNVKAENGKTADSDKEETED 638
Query: 335 GTP-GPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
P P+ + F+SN+ +AQEEDI+ F + G + +I + + TG +G A +
Sbjct: 639 AKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYAD 698
Query: 512 Y 514
+
Sbjct: 699 F 699
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +2
Query: 164 NSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAE--RGNRGRY-DSLAPEGDS 334
+S++ + +++ E+ ++K + +K G ++ A + + G+ DS E +
Sbjct: 579 SSQKRKAEQNVEEESLAKRQKRKSQKEVDLGGQSATVPATKNVKAENGKTADSDKEETED 638
Query: 335 GTP-GPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
P P+ + F+SN+ +AQEEDI+ F + G + +I + + TG +G A +
Sbjct: 639 AKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYAD 698
Query: 512 Y 514
+
Sbjct: 699 F 699
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFVS + E +Q+ F+ FG++ + + DR +G KG+ V Y T
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYAT 84
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 36.7 bits (81), Expect = 0.009
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + +++ + F +FGE+K + D TG +G+ V YE+
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E + F ++GEI + + DR+TG +G+ V Y
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
L P G GP R +FV + E ++ FG +K L DR TG K
Sbjct: 347 LTPGASGGLEGPDR------IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 494 GYALVEYE 517
GYA Y+
Sbjct: 401 GYAFCVYQ 408
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
L P G GP R +FV + E ++ FG +K L DR TG K
Sbjct: 347 LTPGASGGLEGPDR------IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 494 GYALVEYE 517
GYA Y+
Sbjct: 401 GYAFCVYQ 408
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
L P G GP R +FV + E ++ FG +K L DR TG K
Sbjct: 347 LTPGASGGLEGPDR------IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 494 GYALVEYE 517
GYA Y+
Sbjct: 401 GYAFCVYQ 408
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 323 EGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
+G+SG P + +FV V + E+D+++ F +FGE+ ++ + +R GF++
Sbjct: 267 QGNSGESDPTNTT----IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQ 319
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 365 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G L++SN+ EDI+ F+E GE+K ++ D R+G KG A V Y
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 365 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G L++SN+ EDI+ F+E GE+K ++ D R+G KG A V Y
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 36.3 bits (80), Expect = 0.012
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 365 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G L++SN+ EDI+ F+E GE+K ++ D R+G KG A V Y
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVY 135
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.3 bits (80), Expect = 0.012
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
L + N+ +A+ D+++ F FG +K+I+L + TG +G+ V+Y
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 36.3 bits (80), Expect = 0.012
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
FV + E+ I+ F+EFGE+ + + +DR TG KG+ V ++
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFK 93
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.9 bits (79), Expect = 0.017
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + E+ +++ FS FGE+ + + D+ +G +G+ V++
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FV + E Q + ++ F +FGEI + D+ TG KGY V ++
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.9 bits (79), Expect = 0.017
Identities = 15/49 (30%), Positives = 33/49 (67%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LF+ N+ + +E+++ +F+ FGE++++ L L + T +G A V+++T
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E Q E ++ F ++GEI + D+ TG KGY V +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.9 bits (79), Expect = 0.017
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 332 SGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 511
S +P S L+VS + E+ +++ F +FG + ++++ +D+ KG+A +
Sbjct: 65 SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 512 YET 520
YET
Sbjct: 125 YET 127
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+LFV ++ ++ED+ FS FG + + + D +TG YA +E+E
Sbjct: 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFE 292
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 278 AAERGNRGRYDSLAPEGDSGTPGPQRSVEG--WILFVSNVHEEAQEEDIQNQFSEFGEIK 451
AA G + +L G G G E +FV + + EED+ FS+FGE+
Sbjct: 295 AAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVV 354
Query: 452 NIHLNLDRRTGFLK 493
++ + + + GF++
Sbjct: 355 SVKIPVGKGCGFVQ 368
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 272 GSAAERGNRGRYDSLAPEGDSGT-PGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
G A R G Y +GT P+ + +FV + +ED++ F+EFGEI
Sbjct: 272 GPATPRKTNG-YQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEI 330
Query: 449 KNIHLNLDRRTGFLK 493
++ + + + GF++
Sbjct: 331 VSVKIPVGKGCGFVQ 345
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 35.5 bits (78), Expect = 0.022
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 344 GPQRSVE-GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G S+E G L++SN+ EDI+ FSE G++K ++ D R+G KG A V +
Sbjct: 99 GGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVF 155
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.5 bits (78), Expect = 0.022
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+++ NV E + + + + G + ++H+ D+ T KG+A EYET
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYET 57
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.5 bits (78), Expect = 0.022
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + +E+++ F +GEI+ + +D+ TG KGY V ++T
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.5 bits (78), Expect = 0.022
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E ++ FS++GE+ + + +DR TG +G+A V +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+LFV +H + +I++ S++G +K I +R +G KGY VE+
Sbjct: 203 MLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.022
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LF+ N+ E +++++ F FG++ + + +D+ TG K + + Y++
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDS 389
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV + + E ++Q+ FSE+G IK++ + L KG ++YE+
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYES 158
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.022
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LF+ N+ E +++++ F FG++ + + +D+ TG K + + Y++
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDS 380
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV + + E ++Q+ FSE+G IK++ + L KG ++YE+
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYES 149
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + E+ ++ F+++GE+ + + LDR TG +G+ V +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 35.1 bits (77), Expect = 0.029
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+L++ + E +I+ FS+FG +K + + +++TG K + +++E
Sbjct: 61 VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFE 109
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 371 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+L V + E+A EE ++ +FS+ IK++ L D+ T +G+A V +
Sbjct: 459 VLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHF 506
Score = 30.3 bits (65), Expect = 0.82
Identities = 10/47 (21%), Positives = 28/47 (59%)
Frame = +2
Query: 380 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
V + ++ EED+ +E+G + ++ + ++ +G +G+A +++ T
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPT 348
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.1 bits (77), Expect = 0.029
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + EE ++ FS FGE+ + DR TG +G+ V +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 302 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 481
R +S + +G G PG R + FV + E D + F +FG ++ + D T
Sbjct: 91 RSNSSSIQGSPGGPGRTRKI-----FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNT 145
Query: 482 GFLKGYALVEYET 520
+G+ + Y++
Sbjct: 146 QRPRGFGFITYDS 158
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.1 bits (77), Expect = 0.029
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + EE ++ FS FGE+ + DR TG +G+ V +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 302 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 481
R +S + +G G PG R + FV + E D + F +FG ++ + D T
Sbjct: 91 RSNSSSIQGSPGGPGRTRKI-----FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNT 145
Query: 482 GFLKGYALVEYET 520
+G+ + Y++
Sbjct: 146 QRPRGFGFITYDS 158
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 362 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
EG LF+ N+ E ++++ F FG + + + +D+ TG K + V Y++
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDS 399
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LF++ + E+ ++ F FGE+ + + +D+ + KGYA +EY T
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTT 332
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 34.7 bits (76), Expect = 0.038
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+V N+ + +E D++N FS+FG++ IH N+ R F ++L++YE
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDV--IHSNV--RFSF--HFSLIDYE 51
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.7 bits (76), Expect = 0.038
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
+FV + +ED++ FSEFGEI ++ + + + GF++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQ 347
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.038
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E Q E ++ F ++G+I + D+ TG KGY V +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.038
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +2
Query: 269 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
G +A+++G G+ DS T +FV + ++ ++N FS++GEI
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTT--DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 449 KNIHLNLDRRTGFLK 493
++ + +R GF++
Sbjct: 288 VHVKIPAGKRCGFVQ 302
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.038
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +2
Query: 269 GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
G +A+++G G+ DS T +FV + ++ ++N FS++GEI
Sbjct: 230 GPAASKKGVTGQRDSYQSSAAGVTT--DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 449 KNIHLNLDRRTGFLK 493
++ + +R GF++
Sbjct: 288 VHVKIPAGKRCGFVQ 302
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 34.3 bits (75), Expect = 0.050
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
FV + +ED+Q FS+FG++ + + DR +G +G+ V ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 34.3 bits (75), Expect = 0.050
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
FV + +ED+Q FS+FG++ + + DR +G +G+ V ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 34.3 bits (75), Expect = 0.050
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
FV + +ED+Q FS+FG++ + + DR +G +G+ V ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 34.3 bits (75), Expect = 0.050
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
FV + +ED+Q FS+FG++ + + DR +G +G+ V ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.050
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 505
L+V + ++D++ +FS+FG+I++ +R+T F+ Y +
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEM 295
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 34.3 bits (75), Expect = 0.050
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV V E E N F +FGE+ + + DR TG +G+ V +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTF 114
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + +E++++N F +G+I + D TG +G+ V ++T
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT 207
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E ++++ F +FGEI + D+ TG KGY V +
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E ++++ F +FGEI + D+ TG KGY V +
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.088
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +2
Query: 290 GNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 469
G R + AP G P+ + ++V N+ + ++ FSE G++ + +
Sbjct: 181 GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVS 240
Query: 470 DRRTGFLKGYALVE 511
DR TG +G+ V+
Sbjct: 241 DRETGRSRGFGFVQ 254
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 33.5 bits (73), Expect = 0.088
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+ V N+ E+ ++ +FS FGEI + L D KGYA +++
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQF 88
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 33.5 bits (73), Expect = 0.088
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFVS + ++ ++ FS FG+IK L D T KG+ + +++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDS 57
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.5 bits (73), Expect = 0.088
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
+FV + + +ED++ FS+FGE+ ++ + + + GF++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQ 362
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.088
Identities = 26/120 (21%), Positives = 50/120 (41%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 340
E EE EV+E+ + + + A ++ A E G + E
Sbjct: 149 ELEEEIEVEEEAGEFADEIGDGAEDLDSEDDDDD----HAIEEVKHGETVDVEEEEHHDV 204
Query: 341 PGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+R + + +FV ++ + A EED++ F GE+ + + + +T KG A + + T
Sbjct: 205 LHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFAT 264
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 33.5 bits (73), Expect = 0.088
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E ++++ F +FGEI + D+ TG KGY V +
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV + E ++ FSEFG++ N+ + + RT GY V + +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV + E ++ FSEFG++ N+ + + RT GY V + +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127
>At3g12480.1 68416.m01553 transcription factor, putative
Length = 293
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 161 ENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 340
++ EE++ + E G A+ + + +GRG G AAER R + +SG
Sbjct: 121 DSDEEYKKSKTQEIGSAKTSGRGGRGRGRGRGRGGRAAKAAEREGLNR-EMEVEAANSGQ 179
Query: 341 PGPQRSVE 364
P P+ +V+
Sbjct: 180 PPPEDNVK 187
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 377 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
FV + ++ E+D+ + FS+FG + + + DR TG + + V +E
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFE 56
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
L+ G GP R +FV + E I+ FG ++ +L DR TG K
Sbjct: 363 LSSGSTGGLEGPDR------IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSK 416
Query: 494 GYALVEYE 517
GYA Y+
Sbjct: 417 GYAFCVYQ 424
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E +E ++ F +FGEI + D+ +G KGY V +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E +E ++ F +FGEI + D+ +G KGY V +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E +E ++ F +FGEI + D+ +G KGY V +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + E ++ F FG+I + + LDR +G +G+ V Y++
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDS 86
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G LFV ++H + +++ + ++G +K + ++ +G KGY VE+
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
L+++N+ + EE + FS+FG++ L D R G +G+A +E+E+
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFES 66
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +2
Query: 305 YDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTG 484
YD+ A G P R + G +FV + +EA +D+++ F FG I++ ++ D +
Sbjct: 221 YDNPATFYGRGEP-TTRGI-GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRS 278
Query: 485 FLKGYALVEY 514
+G+ V +
Sbjct: 279 GHRGFGFVTF 288
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/49 (20%), Positives = 25/49 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV+ + E D ++ F +GEI ++++ D + +G + + +
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSS 141
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 293 NRGRYDSLAPEGDS-GTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL 469
+RG S G G G + G ++V N+ + +++ FSE G++ +
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 237
Query: 470 DRRTGFLKGYALVEYET 520
DR +G KG+ V Y++
Sbjct: 238 DRDSGRSKGFGFVTYDS 254
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + E E + F +GEI+ + +D+ TG KG+ V ++T
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + E E + F +GEI+ + +D+ TG KG+ V ++T
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 185 DEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
+ GE G R + R GRGFG GGG +RG RGR
Sbjct: 3 ERGGESGAERGGD--RGDFGRGFGGGRGGGRGRDRGPRGR 40
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 185 DEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
+ GE G R + R GRGFG GGG +RG RGR
Sbjct: 3 ERGGESGAERGGD--RGDFGRGFGGGRGGGRGRDRGPRGR 40
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 185 DEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
+ GE G R + R GRGFG GGG +RG RGR
Sbjct: 3 ERGGESGAERGGD--RGDFGRGFGGGRGGGRGRDRGPRGR 40
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + EE+ +N F +FG I ++ + D T +G+ + +++
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + EE+ +N F +FG I ++ + D T +G+ + +++
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + EE+ +N F +FG I ++ + D T +G+ + +++
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 508
+++ NV EE + FS GEIK I + LD+ T G+ V
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 194 GEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEG 367
G++ E+ R GRGFG GGG RG R ++ + G+S P P G
Sbjct: 1074 GKKDEGGYSEQTFDRGGRGFGGRRGGG---RRGGRDQFGRGSSFGNSEDPAPWSKPSG 1128
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 508
LFV + E E+ ++ F+ +GE+ + D+ TG +G+ V
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFV 52
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 32.3 bits (70), Expect = 0.20
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + + E+++ F +GEI + +D+ TG KG+ V ++T
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 221 EKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWI 373
++ R GRG G+ GGG RG GR + D G P +S G +
Sbjct: 76 DRGRGYSGRGDGHGRGGGGDRGRGYSGRGRGFVQDRDGGWVNPGQSSGGHV 126
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 236 RKGRGFGNEAGGGSAAERGNRGRYDSLAPEGD 331
R GRG G GGG RG GR D GD
Sbjct: 7 RGGRGDGRGRGGGGDRGRGYSGRGDGRGRGGD 38
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +2
Query: 221 EKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEG 367
++ R GRG G GGG RG GR D G G G S G
Sbjct: 57 DRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHG-RGGGGDRGRGYSGRG 104
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
++V + ++E + N F FGEI ++++ DR T +GY V ++
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFK 62
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
P SVE +LFV+N+ + + DI + F+ GE+ +I L ++ G GY VE+
Sbjct: 238 PPNSVEE-VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEF 291
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV+++ + + I N F + GE+ ++ L L+ TG G A VE+
Sbjct: 361 LFVAHLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVGCAFVEF 406
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 317 APEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKG 496
AP G P+ + ++V N+ + ++ FSE G++ + DR TG +G
Sbjct: 227 APRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 286
Query: 497 YALV 508
+ V
Sbjct: 287 FGFV 290
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.9 bits (69), Expect = 0.27
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
L++ N+ + E+ ++ +F+EFG+I ++ + D +GYA V ++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFD 249
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
++V NV+ EE+++ FS+ G I + L D + G KG+ V + T
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFST 353
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 31.9 bits (69), Expect = 0.27
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 242 GRGFGNEAGGGSAAERGNRGR 304
GRGFG GGG +RG RGR
Sbjct: 20 GRGFGGGRGGGRGRDRGPRGR 40
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.9 bits (69), Expect = 0.27
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV+N+ + Q DI N F + GE+ ++ L ++ + G G+ VE+
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEF 294
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFVS + + + DI + FS+ GE+ N+ + L TG AL+ +
Sbjct: 66 LFVSELSRQTKISDIIDFFSDVGEVVNVRICLS-HTGSCCVLALLSF 111
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E + ++N F +FG+I + D+ +G KGY V +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV + E + ++N F +FG+I + D+ +G KGY V +
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
L G+ GT L+V ++ E+DI++QF GEI++I + D+ F+
Sbjct: 210 LGKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFV 268
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 365 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G L V+N+ + EDI+ FSE GE++ ++ D + G G A V Y
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYD-KNGRPSGTAEVVY 140
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV + + ++ F+ FGE+ + DR TG +G+ V +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LFV + + ++ F+ FGE+ + DR TG +G+ V +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 31.5 bits (68), Expect = 0.36
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 NEAGGGSAAERGNRGRYDSLAPEGDSGTPG------PQRSVEGWILFVSNVHEEAQEEDI 418
N A S + +RG ++ P T G P LFV N++ ++ ++
Sbjct: 142 NHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSEL 201
Query: 419 QNQFSEFGEIKNIHLNLDRRTGFL 490
F FGEI++++ R GF+
Sbjct: 202 SALFEPFGEIRSLYTACKSR-GFV 224
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 31.5 bits (68), Expect = 0.36
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 NEAGGGSAAERGNRGRYDSLAPEGDSGTPG------PQRSVEGWILFVSNVHEEAQEEDI 418
N A S + +RG ++ P T G P LFV N++ ++ ++
Sbjct: 155 NHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSEL 214
Query: 419 QNQFSEFGEIKNIHLNLDRRTGFL 490
F FGEI++++ R GF+
Sbjct: 215 SALFEPFGEIRSLYTACKSR-GFV 237
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + E ++ FS FGE+ + + ++ TG +G+ V +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAF 54
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
L G+ GT L+V ++ E+DI++QF GEI++I + ++ F+
Sbjct: 210 LGKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFV 268
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 31.5 bits (68), Expect = 0.36
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 349 RSWCTAIAFRS*T---VVS-SAVTPFCSTASTGFIAKTTTFSLTCLLLKSSD 206
R + I F S T +VS S PFC+T TG+I+ T CL+LK D
Sbjct: 128 REFTCGICFDSYTLEEIVSVSCGHPFCATCWTGYISTTINDGPGCLMLKCPD 179
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
++V N+ Q + ++N FS+FG I + + DR+TG + +A + +
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSE-FGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV ++ E + + + F +G +K + LDR TG KGY V +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/40 (22%), Positives = 25/40 (62%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
+FV + ++++++ F +FGE+ ++ + +R GF++
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQ 301
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
PQ + ILFV NV ++ ++ F +FG+++ +H G +G+ +V Y
Sbjct: 204 PQGEILSRILFVRNVDSSIEDCELGVLFKQFGDVRALH-----TAGKNRGFIMVSY 254
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 155 DIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPE 325
DI+ E+ E +ED E +E+++ +K GN+ GG S + G+ D PE
Sbjct: 314 DIDEDEDEEDEEDEEDDDDEDEEESKTKKKPSIGNKKGGRS--QIVGEGKQDERPPE 368
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + +++ F+ FG++ + + +DR TG +G+ V +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF+ + + +++ F+ FG++ + + +DR TG +G+ V +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 509
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 191 DGEQGIARLKEKARK--RKGRGFGNEAGGGSAAERGNR 298
+ E G RLKEKA K + RG G+E G G+ A NR
Sbjct: 445 ESESGSGRLKEKASKILQTLRGGGSEFGEGAEAREWNR 482
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV + + EE + FS++G++ + + +D+ KG+A V + +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSS 71
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 365 GWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
G ++++N+ + EDI+ ++E GE+K ++ D + G G A V Y
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYD-KNGRPSGSAEVVY 154
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 302 RYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNI-----HLN 466
R D+ PE ++ P + EG I FV N+ ++ + + F +FG I+N+ H
Sbjct: 144 RSDTKPPEEETRNPQQEFRQEGKI-FVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHE 202
Query: 467 LDRRTGF 487
+++ GF
Sbjct: 203 VEKNAGF 209
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.7 bits (66), Expect = 0.62
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +2
Query: 362 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 517
EG LF+ N+ E ++++ F FG + + + +D+ TG K + + ++
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 185 DEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 304
+ GE+G+ R E R GRGFG G G RG GR
Sbjct: 3 ERGGERGVERGGE--RGDFGRGFGGRGGRGDRGGRGRGGR 40
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 30.3 bits (65), Expect = 0.82
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
P+ V + V+N+ + EE+++ FS+ GE+ I++ + KGY V+++T
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGEV--IYVKIPA----TKGYGYVQFKT 281
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 347 PQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
PQ E L++ ++ E + + FS+ GE+ ++ + ++ TG +GY +E+
Sbjct: 17 PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +2
Query: 242 GRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTP 343
GRGFG GGG RG RGR APE + P
Sbjct: 16 GRGFGGR-GGGRGGPRG-RGRRAGRAPEEEKWVP 47
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 30.3 bits (65), Expect = 0.82
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
LFV N+ E + F E G++ + D TG +GY V Y +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + E + +N F +FG I ++ + D T +G+ + +++
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 172
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV N+ +D++ F +FG++ + ++ + G KGY + +
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 289 PFCSTASTGFIAKTTTFSLTCLLLKSSD 206
PFC+T TG+I+ T CL+L+ D
Sbjct: 157 PFCTTCWTGYISTTINDGPGCLMLRCPD 184
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 146 DVLDIENSEEFEVDEDGEQGIARLKE-KARKRKGR 247
+V+D+ + EE +DED + G + K+ K KRK R
Sbjct: 50 EVIDLNDDEEASLDEDDDLGYLQKKQHKGSKRKTR 84
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 242 GRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 349
GRG G GG ++RG RGR G G GP
Sbjct: 33 GRGGGGRGGGRGFSDRGGRGRGRGPPRGGARGGRGP 68
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
LF ++ E ++ + F+ F + D+RTG KGY V +
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 314 LAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 463
L G+ GT P L+V ++ E+DI + F +GE+++I +
Sbjct: 207 LRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+++ + +A E D++ GE+ + + ++ +G KGYA V + +
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRS 142
>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4)
contains Pfam domain PF00098: Zinc knuckle; identical to
cDNA CAX-interacting protein 4 GI:27651998
Length = 332
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 155 DIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDS 334
D ++S+E E ++D KEK R+R R +++ S+ + + R + +A DS
Sbjct: 239 DEDDSDESEDEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQKRRNKVAASSDS 298
>At1g09890.1 68414.m01113 expressed protein ; expression supported
by MPSS
Length = 633
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +2
Query: 284 ERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 463
E NRG +D + G SGT G ++G V +EE E ++ E K + L
Sbjct: 50 EEVNRGYWDLVW--GGSGTAGGFDVIKGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPL 107
Query: 464 NLDRRTGFLKG 496
N+D+R L G
Sbjct: 108 NIDKRFVMLSG 118
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 308 DSLAPEGDSGTPGPQRSV--EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRT 481
D+++ D+ G + EG ++V ++ A + ++ +F +FG I N + + +
Sbjct: 297 DTVSESVDASENGHNQEAVAEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQR 356
Query: 482 GFLKGYALVEYE 517
G Y VE+E
Sbjct: 357 GLGYPYGFVEFE 368
>At2g09910.1 68415.m01029 hypothetical protein
Length = 985
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 182 VDEDGEQGIARLK--EKARKRKGRGFGNEAGGGSAAERG 292
VD+D ++ + L+ ++R+ KG+G N++ SA+E G
Sbjct: 417 VDQDKDETVEELETSRRSREEKGKGVANQSKKRSASEAG 455
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYET 520
+FV + EE+ ++ F FG ++ + D T +G+ V Y++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV ++ E + + FS F + + D++TG +G+ V +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 221 EKARKRKGRGFGNEAGGGSA-----AERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVS 385
EK R RKG F + GG S+ R NR + A S + SV+ L
Sbjct: 202 EKPRTRKGNNFSDNLGGASSLVQIWEARLNRSNGGNSAIHSQSIEISSEASVQEIHLLAP 261
Query: 386 NVHEEAQEEDIQNQFSEFGEIKNIHLN 466
++ E++ E+ + EI++ LN
Sbjct: 262 SIDGESESENESKSPDQTVEIESGTLN 288
>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 1019
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 197 EQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVE 364
++G A E+ K + GFGNE + E+ + G ++ + SG P VE
Sbjct: 691 QEGAALWDEEWDKFEDEGFGNEITFDKSKEQNSSGEKENGTVDDGSGPPDSPTHVE 746
>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
Length = 281
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 224 KARKRKGRGFGNEAGGGSAAERGNRGR 304
K + RKGRG G +G G A RG++G+
Sbjct: 76 KLKTRKGRGIG--SGKGKTAGRGHKGQ 100
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 143 ADVLDIENSEEFEVDEDGEQGIARLKEKARKRKGR 247
ADV+D + +E+ E ++ E+ R KEK +K+ +
Sbjct: 126 ADVVDEKVNEKLEAEQRSEERRERKKEKKKKKNNK 160
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 398 EAQEEDIQNQFSEFGEIKNIHLNLD-RRTGFLKGYALVEYET 520
+ + ED+++ FS++G++ ++ + + G ALVE+ T
Sbjct: 126 DVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPT 167
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 410 EDIQNQFSEFGEIKNIHLNLDRRTGFLK 493
ED++ F +FG++K + + TG+L+
Sbjct: 317 EDLKAVFGKFGDVKFVDFKMGSETGYLR 344
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 182 VDEDGEQGIARL--KEKARKRKGRGFGNEAGGGSAAERG 292
+DED ++ +A L ++R+ KG+G ++ SA+E G
Sbjct: 452 LDEDKDETVAELGISRRSREEKGKGVATQSKKRSASEAG 490
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 197 EQGIARLKEKARKRKGRGFGNEAGGGSAAERG 292
E + +KE R+R G G+ GGGS +G
Sbjct: 202 ESAVLFVKEVLRRRDGFGYSVVGGGGSEGRKG 233
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY 514
+FV ++ E + + + FS F + + D++TG +G+ V +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
LFV N++ ++ ++ F ++G+I+ ++ R GF+
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR-GFV 207
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 490
LFV N++ ++ ++ F ++G+I+ ++ R GF+
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR-GFV 207
>At5g63180.1 68418.m07932 pectate lyase family protein similar to
pectate lyase GP:14289169 from [Salix gilgiana]
Length = 432
Score = 27.5 bits (58), Expect = 5.8
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +2
Query: 221 EKARKRK---GRGFGNEAGGGSAAER---GNRGRYDSLAPEGDSGTPGPQRSVEGWILFV 382
EK RKR G GFG A GG E + G D + P + + WI+F
Sbjct: 95 EKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFK 154
Query: 383 SNVHEEAQEEDIQNQFSEF-GEIKNIHLN 466
++ + +EE I N F G ++H++
Sbjct: 155 RDMTIQLKEELIMNSFKTLDGRGASVHIS 183
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 374 LFVSNVHEEAQEEDIQNQFSEFGEIKNIH 460
LFV + E ++ FSEFG++ N H
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNEH 88
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing protein
similar to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627, aysnaptic 1 [Brassica oleracea var.
alboglabra] GI:23506946; contains Pfam profile PF02301:
HORMA domain
Length = 1399
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 182 VDEDGEQGIAR--LKEKARKRKGRGFGNEAGGGSAAERG 292
+D+D ++ +A + ++R+ KG+G N++ SA+E G
Sbjct: 1044 LDQDKDETVAEPGISRRSREEKGKGGANQSKKRSASEAG 1082
>At3g62490.1 68416.m07021 expressed protein hypothetical proteins -
Arabidopsis thaliana
Length = 559
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Frame = +2
Query: 146 DVLDIENSEEFE-----VDEDGEQGIAR--LKEKARKRKGRGFGNEAGGGSAAERG 292
++ + + SEE +D D ++ +A + ++R+ KG+G N++ SA+E G
Sbjct: 232 EIAECDQSEEVNTGLTILDRDKDETVAEPGISRRSREEKGKGVANQSKKRSASEGG 287
>At3g61040.2 68416.m06831 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase - Arabidopsis thaliana,
EMBL:D78600
Length = 395
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 424 ILYIFFLCFFMYITDKQNP 368
+L+IFFL FF Y T K P
Sbjct: 10 LLFIFFLFFFFYTTGKSCP 28
>At3g61040.1 68416.m06830 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase - Arabidopsis thaliana,
EMBL:D78600
Length = 498
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 424 ILYIFFLCFFMYITDKQNP 368
+L+IFFL FF Y T K P
Sbjct: 10 LLFIFFLFFFFYTTGKSCP 28
>At2g17740.1 68415.m02055 DC1 domain-containing protein
Length = 248
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 218 KEKARKRKGRGFGNEAG-GGSAAERGNRGRYDSLA 319
+E+ K+ GRG G E G GG+ RG LA
Sbjct: 177 EEEKSKKGGRGRGGEGGSGGNGVNRGRSSANSELA 211
>At1g20220.1 68414.m02525 expressed protein
Length = 315
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 179 EVDEDGEQGIARLKEKARKRKGRGFGNEAGG 271
E+D +G+ G R + R R GRG G GG
Sbjct: 138 EIDYEGQDGSPRGRGGRRGRGGRGRGRGRGG 168
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 182 VDEDGEQGIARLKEKARKRKGRGFGNEAGGG----SAAERGNRGRYDSLAPEGDSGTPGP 349
+++D G R + + R GRG G G A + G Y+++AP D G GP
Sbjct: 221 MEQDRSYGRGRGRGRGGGRGGRGRGGYNGPPPPYYEAQQDGGDYGYNNVAPPADHGYDGP 280
>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
identical to fibrillarin 1 GI:9965653 from [Arabidopsis
thaliana]; C-terminus identical to SKP1 interacting
partner 7 GI:10716959 from [Arabidopsis thaliana];
contains Pfam domain PF01269: Fibrillarin
Length = 308
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 242 GRGFGN--EAGGGSAAERGN---RGRYDSLAPEGDSGTP 343
GRGFG GGG + +RG RGR AP G G P
Sbjct: 22 GRGFGGGRSFGGGRSGDRGRSGPRGRGRG-APRGRGGPP 59
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 269 GGSAAERGNRGRYDSLAPEGDSG 337
GG ++E +RGR+D L +G +G
Sbjct: 138 GGDSSETSSRGRHDKLDDKGGAG 160
>At5g08660.1 68418.m01031 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 649
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 233 KRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSG--TPGPQRSVEGWILFVSNVHEEAQ 406
K G FG+E G S A+ G + P G + PG ++ L V +V E+ Q
Sbjct: 7 KSLGINFGSEYSGSSVADDGREPDFGHSQPNGQTSLIVPGMRQ------LMVKDVKEQNQ 60
Query: 407 EEDI 418
+D+
Sbjct: 61 LKDV 64
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 374 LFVSNVHEEAQEED-IQNQFSEFGEIKNIHLNLDRRTGFLK 493
LFV+ V E+ D I F +FG++ +IH+ ++ F++
Sbjct: 440 LFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQ 480
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 374 LFVSNVHEEAQEED-IQNQFSEFGEIKNIHLNLDRRTGFLK 493
LFV+ V E+ D I F +FG++ +IH+ ++ F++
Sbjct: 440 LFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQ 480
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 434 EFGEIKNIHLNLDRRTGFLKGYALVEYE 517
+FGEI ++ L +DR +G A VE++
Sbjct: 10 DFGEIIHVQLAIDRAANLSRGDAYVEFK 37
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 221 EKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 340
+K R G G + GGG AE G RG +G T
Sbjct: 277 DKTNGRGGEGREEDNGGGRGAEGGGRGSTGEGVTDGGGRT 316
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 353 RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEI 448
+ EG+ +FV+N+ +A E + F FG I
Sbjct: 272 QQAEGYTIFVANLLMDATPEQLNETFKGFGAI 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,281,337
Number of Sequences: 28952
Number of extensions: 174036
Number of successful extensions: 1026
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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