Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312D01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11151| Best HMM Match : Neur_chan_memb (HMM E-Value=3.6e-10)        33   0.11 
SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_26280| Best HMM Match : Extensin_2 (HMM E-Value=0.075)              30   1.0  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 29   2.3  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)            28   5.4  
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 27   7.1  

>SB_11151| Best HMM Match : Neur_chan_memb (HMM E-Value=3.6e-10)
          Length = 434

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 337 CNSELLIQTW--TLNIKLAVLQRNRQGILHFDVNGKFLAGDRFAVNRYFDVRIPDPEVVL 510
           C + LL Q W  T +I+   L    + I+  +  G  +      V RY ++RIP PE VL
Sbjct: 339 CENRLLNQVWIATSDIQRRRLTATLRDIILME-GGLNITCLPPLVGRYVNIRIPGPENVL 397

Query: 511 CEV 519
           CEV
Sbjct: 398 CEV 400


>SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 501 FRVRNPDIKITIDGKPVSRQEFTVHIKVENPLPIPLKNGK 382
           F + +P ++  I G   S++E    + VE  L IPL +GK
Sbjct: 368 FYLGDPSLRCNIKGLSPSKEEHGTFLDVETDLGIPLSSGK 407


>SB_26280| Best HMM Match : Extensin_2 (HMM E-Value=0.075)
          Length = 285

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 477 KITIDGKPVSRQEFTVHIKVENPLPI--PLKNGKFYIQGPGLDEQLRI 340
           ++ I+G P+S+Q +     +   L I  P  +G+ YI GP L EQL I
Sbjct: 176 QLYINGPPLSKQLYINGPSLSEQLYINGPPLSGQLYINGPQLSEQLYI 223



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 477 KITIDGKPVSRQEFTVHIKVENPLPI--PLKNGKFYIQGPGLDEQLRI 340
           ++ I+G P+S Q +    ++   L I  P  +G+ YI GP L EQL I
Sbjct: 110 QLYINGPPLSGQLYINGPQLSEQLYINGPPLSGQLYINGPQLSEQLYI 157



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 477 KITIDGKPVSRQEFTVHIKVENPLPI--PLKNGKFYIQGPGLDEQLRI 340
           ++ I+G P+S Q +    ++   L I  P  +G+ YI GP L EQL I
Sbjct: 198 QLYINGPPLSGQLYINGPQLSEQLYINGPPLSGQLYINGPQLSEQLYI 245



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 477 KITIDGKPVSRQEFTVHIKVENPLPI--PLKNGKFYIQGPGLDEQLRI 340
           ++ ++G P+S Q +    ++   L I  P  +G+ YI GP L EQL I
Sbjct: 88  QLYMNGPPLSGQLYINGPQLSEQLYINGPPLSGQLYINGPQLSEQLYI 135


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 472 ND*RQTGLPPRIYRSHQSGESLAYSVEERQVLYS 371
           ND + T L PR++ S QS  +  Y +  R+ LY+
Sbjct: 824 NDMQTTSLAPRVFASLQSFANYRYMLRHREELYT 857


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 507  DDFRVRNPDIKITIDGKPVSRQEFTVHIKVENPLPIPLKNGKFYIQGPGLDEQLRIALDE 328
            DD   RN  I+  + G   S  ++T  +++   L        F+I  P +D+   IAL E
Sbjct: 2176 DDLLSRNSSIRSFLFG---SSDKYTTWVRLVKSLKDNSTLSTFHIHSPSIDDNCAIALAE 2232

Query: 327  NVAPGTFAT 301
             ++  T  T
Sbjct: 2233 VLSGNTTLT 2241



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 381 FYIQGPGLDEQLRIALDENVAPGTFAT 301
           F+IQ P +D+   IALDE ++  T  T
Sbjct: 903 FHIQSPSIDDNCAIALDEVLSGNTTLT 929


>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
          Length = 652

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 167 EDTPLVSGIDTIKDRNPSISRISLDVNLA-EI*CLPAHGGVSLKLAVAKVPGATFSS 334
           ED PL   ID  KD N   S+   D+ L     C   +     +L V  +P   +SS
Sbjct: 241 EDEPLRCNIDECKDHNGHCSQKCNDLTLGYNCSCFSGYKLQGARLCVGTLPSLVYSS 297


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 213 FLSFIVSMPETNGVSSETVET---RQI*FISFKHLLSK*IVLIMITALYLLFYIYLTCK 46
           +LS +  +  TN + SETVET   R+      K L S   V  +  A + +F IYLT K
Sbjct: 499 YLSILKGLLITNSICSETVETIQGREEKKKLAKLLASVTGVYFICFAPFAIFMIYLTAK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,677
Number of Sequences: 59808
Number of extensions: 307699
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)