Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312C08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)               28   4.1  
SB_4583| Best HMM Match : Calx-beta (HMM E-Value=0.00046)              28   5.4  
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)                 27   7.1  
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       27   9.4  

>SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)
          Length = 904

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 221 STYPIFLFLFYLINIVFFFFRYN 153
           +TYP FL +F+L++++F    +N
Sbjct: 299 TTYPTFLRVFFLLHLMFLLINWN 321


>SB_4583| Best HMM Match : Calx-beta (HMM E-Value=0.00046)
          Length = 286

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 290 SVGAKYECNFVMSILTMSINVYLSTYPIFLFLFYLINIVFFFFRYNNIN 144
           SV      N +++I+ + I++ +S     + +  LINI+      NNIN
Sbjct: 153 SVAPTTSANVIINII-IGISIIISNIIFTIIIIILINIIIITINNNNIN 200


>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
          Length = 863

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 299 LSPSVGAKYECNFVMSILTMSINVYLSTYPIFLFLFYLIN 180
           L+P +  K E   + + L +++ + LS  PI LF  YL+N
Sbjct: 301 LNPLINTKSERKALKTSLFVAMTLALSFAPITLFNLYLLN 340


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 250 MLITKLHSYLAPTEGDN--VPIYVLSILKKNLRPQFIPTFLILNVY 381
           M+   L ++L P E +   + +Y+ ++  + +RPQ+ P F +L V+
Sbjct: 1   MVPVPLENFLYPIEQEEALLKLYLRALANQVVRPQWCPLFYLLAVH 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,177
Number of Sequences: 59808
Number of extensions: 207810
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)