Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 29   1.8  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                27   7.1  

>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 421

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -2

Query: 181 KH*NSKKQFLFPLEAYLKSSSFSSALLPVTWGRRN--MFSPSILLYHIPYHSPLTHIV 14
           K+ + ++Q   PL+A   +S+F++++    W  ++  MF+  IL + +PY +P+ + +
Sbjct: 235 KYLHRRRQQAHPLQA---NSTFNASMRSTLWQLKDSYMFASLILAFVVPYAAPILYTI 289


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -3

Query: 171 TAKNSFCFLWKLTLNHHHSPLPFSQSPGVGATCFLLPYSSIIYHTTPLLHISS 13
           +A  S C +    ++HHH    ++ S  + + C ++  + I++H     H +S
Sbjct: 220 SALPSLCIMIITVMHHHHHHRHYASSSSLPSLCSIIIITVIMHHHHHYRHYAS 272


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 506 QGDRADKMAHVPGDRKPEVMESLLYVRVHHN 414
           +G + D    VP D+KPEV +S L  ++  +
Sbjct: 488 EGGKKDDQKKVPEDKKPEVKDSALDTKMEED 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,021
Number of Sequences: 59808
Number of extensions: 355860
Number of successful extensions: 861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)