Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312B05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ...    51   4e-07
At1g14530.2 68414.m01724 tobamovirus multiplication protein 3, p...    29   2.5  
At1g14530.1 68414.m01723 tobamovirus multiplication protein 3, p...    29   2.5  
At2g02180.1 68415.m00154 tobamovirus multiplication protein 3 (T...    27   5.8  

>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 371

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +2

Query: 203 MPPKKPSGASXXXXXXXXXXVIEDKTFGLKNKKGAKQ-QKFIQQVEKQVKSGGVHPVKPV 379
           MPPK+   A            +EDKTFGLKNK  +K  QK++Q +++ V+     P    
Sbjct: 1   MPPKQQPKADLAKKQKQ----VEDKTFGLKNKNKSKNVQKYVQSLKQSVQP---KPDATK 53

Query: 380 EDXXXXXXXXXXXXXXXAALFKPVQTQ-KVEKGTDPKSVXCAFFKQGQ 520
                              LFK   +Q KV  G DPKS+ C FFK GQ
Sbjct: 54  AAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQ 101


>At1g14530.2 68414.m01724 tobamovirus multiplication protein 3,
           putative / TOM3, putative (THH1) identical to THH1
           (GI:15706301) [Arabidopsis thaliana]; supporting cDNA
           gi|15706300|dbj|AB057678.1|
          Length = 293

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 366 GCTPPLFTCFSTC*MNFCCLAPFLFFKPNVLSSITFSFFFCSVFLLAPLGFL--GGMVRF 193
           G  P  FT  +   +    L   L++KP  L  I    FF  V L A LGFL  GG +  
Sbjct: 142 GLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFLLYGGRLFL 201

Query: 192 RLVTF 178
            L  F
Sbjct: 202 MLQRF 206


>At1g14530.1 68414.m01723 tobamovirus multiplication protein 3,
           putative / TOM3, putative (THH1) identical to THH1
           (GI:15706301) [Arabidopsis thaliana]; supporting cDNA
           gi|15706300|dbj|AB057678.1|
          Length = 293

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 366 GCTPPLFTCFSTC*MNFCCLAPFLFFKPNVLSSITFSFFFCSVFLLAPLGFL--GGMVRF 193
           G  P  FT  +   +    L   L++KP  L  I    FF  V L A LGFL  GG +  
Sbjct: 142 GLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFLLYGGRLFL 201

Query: 192 RLVTF 178
            L  F
Sbjct: 202 MLQRF 206


>At2g02180.1 68415.m00154 tobamovirus multiplication protein 3
           (TOM3) identical to tobamovirus multiplication protein
           (TOM3) GI:15425641 from [Arabidopsis thaliana]
          Length = 303

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 366 GCTPPLFTCFSTC*MNFCCLAPFLFFKPNVLSSITFSFFFCSVFLLAPLGFL--GGMVRF 193
           G  P  FT  +   +    L   L++KP  +  I    FF  V L A LGFL  GG +  
Sbjct: 152 GLRPSFFTINAVVYVVQIALWLVLWWKPVRVMVILSKMFFAGVSLFAALGFLLYGGRLFL 211

Query: 192 RLVTF 178
            L  F
Sbjct: 212 MLQRF 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,292,664
Number of Sequences: 28952
Number of extensions: 156693
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)