Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312A03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               70   1e-12
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)            32   0.25 
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              30   1.3  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)                       29   1.8  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 28   5.4  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)           27   7.1  
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)             27   7.1  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)                27   7.1  
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)             27   7.1  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_59583| Best HMM Match : CSE2 (HMM E-Value=5.4)                      27   9.4  

>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 32/63 (50%), Positives = 43/63 (68%)
 Frame = -3

Query: 309 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKPQ 130
           FGKME A E++YF + Q +QLA LK H    IA H+++I+ HE+AIRRHKE +   EK  
Sbjct: 80  FGKMEQAHEEQYFRQMQAQQLAALKEHQEHLIATHKQEIEHHEEAIRRHKEALKSYEKKD 139

Query: 129 *TG 121
            +G
Sbjct: 140 GSG 142


>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
          Length = 520

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 303 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIR 169
           K   A E E   K+Q ++L  + G L  E+A   + IK+ ++AIR
Sbjct: 349 KRRLAAETEEALKEQDDRLGKILGKLQLEVARRDDIIKKQDEAIR 393


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -3

Query: 309  FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 139
            F +++ A+ D   Y+ +KE+          E+   Q+Q ++ ED ++  K+++SD+E
Sbjct: 1595 FDELDGAKRDRDKYQLEKEEAEKRLQSYEDELNEKQKQKEKAEDNLKALKKRISDLE 1651


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 170 LIASSCRLICSWWKAISLFKCPFRFAS 250
           LI + C  +C+W KA+S  +  FR AS
Sbjct: 124 LITAVCLCLCAWVKAVSFSRLEFRAAS 150


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 261  QKEQLANLKGHLNKEIAFHQEQ----IKRHEDAIRRHKEQM 151
            Q E    LK HL +++A HQE+     ++HE  +   KEQM
Sbjct: 926  QYEGALQLKEHLKRQLASHQEKSTRYTRQHEKKVAALKEQM 966


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 267 KKQKE-QLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 136
           K+Q E ++  LK HL KE   HQ  ++R +   + HK+ +++I K
Sbjct: 689 KQQYESEIQGLKDHLAKESQRHQADVRRRD---QEHKKDITNIHK 730


>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
          Length = 1080

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 306 GKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 172
           G +E    D   Y KQ+ +L  LK HL   I FHQ+  K   + I
Sbjct: 188 GLLEERGVDGSSYSKQRLKLC-LKHHLEDRITFHQQPSKNKPEII 231


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/49 (24%), Positives = 30/49 (61%)
 Frame = -3

Query: 297 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQM 151
           E+ RE+    +K+KE+L ++K  L +++   Q +I   ++ + +++E +
Sbjct: 452 ESYREELMNERKEKERLLSIKDKLRRDLDSTQSRISSLQEQVYKYREHI 500


>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 303 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 136
           K+    E++ F +K  E LA  K +L KE+   +E  +  +      K Q++DIE+
Sbjct: 223 KLSRLEEEKDFLQKMVETLAIAKENLTKEVEGLKESNQLMQKDSADAKSQLNDIEE 278


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 303  KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 145
            K  +  EDE+  K+ KE+    K H     A H+++ K+H+   ++ K++ SD
Sbjct: 1174 KALSGEEDEWVEKEGKEKKKKHKKHKKHGSAKHKKKDKKHKK--QKEKQKTSD 1224


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -3

Query: 282  DEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 136
            D   + K+ ++L+    HL K++   +  + ++EDA+   ++ + DIEK
Sbjct: 2537 DAQDFNKRYDKLSAGIDHLKKKVEDTKAAVDKYEDALSPVQKALDDIEK 2585


>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 309 FGKMEAAREDEYFYKKQKEQ-LANLK-GHLNKEIAFHQEQIKRHEDAIRRHKEQM 151
           FG+    ++ EYF    K+  L N + G   KEI  H +Q K H +   R  E M
Sbjct: 63  FGQSLVTKDLEYFESLYKQNTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAM 117


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = -3

Query: 303 KMEAAREDEYFYKKQKEQL-ANLKGHLNKE-IAFHQEQIKRHE-DAIRRHKEQMSDIEKP 133
           ++E  R++E   +KQ++QL    +  L +E I    E+ KR E +   R K+Q  D+EK 
Sbjct: 145 ELEEKRKEEEEKEKQRKQLEVEKQKRLEEERIRSQNEERKRREREQKEREKQQKLDMEKE 204

Query: 132 Q 130
           +
Sbjct: 205 E 205


>SB_42129| Best HMM Match : Endonuclease_NS (HMM E-Value=8.2)
          Length = 251

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 104 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSW 205
           +Y   CP HWGF  +++    R     C  + SW
Sbjct: 194 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSW 226


>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
          Length = 361

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 104 NYHYRCPVHWGFSMSDICSL*RLIASSCRLICSW 205
           +Y   CP HWGF  +++    R     C  + SW
Sbjct: 304 DYRLGCP-HWGFEWTEMAGFYRFEPKPCVNMSSW 336


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 288 REDEYFYKKQKEQLANLKGHL 226
           +E+E F+KK+K+  A L+G+L
Sbjct: 708 KEEEDFHKKEKQNYAGLRGNL 728


>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
          Length = 293

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 222 KEIAFHQEQIKRHEDAIRRHKEQM 151
           K++  HQEQ+  H + +  HKEQ+
Sbjct: 23  KQLIAHQEQLIAHTEQLIAHKEQL 46


>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
          Length = 567

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 207 HQEQIKRHEDA-IRRHKEQMSDIEKPQ*T 124
           +Q  ++R +DA +RRHK  MS I+K Q T
Sbjct: 381 YQRILRRKQDAMLRRHKSLMSRIKKKQAT 409


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -3

Query: 303 KMEAAREDEYFYKKQKEQ----LANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 139
           ++E  RE    YK   E+    L  L+ H+ KEI   +++ +  E  ++    + SD+E
Sbjct: 622 ELEQTREKCAHYKNGLEETEAMLRKLEAHIEKEITTWEQKYQAAEKELQLANSRFSDLE 680


>SB_59583| Best HMM Match : CSE2 (HMM E-Value=5.4)
          Length = 175

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = -3

Query: 303 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 136
           K + +R  +   +KQ  +         K+I  +++QI R++  IRR+K+Q+   +K
Sbjct: 117 KKQISRNKKQIRRKQISRSKKRIRRNKKQILRNKKQISRNKKRIRRNKKQIRRSKK 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,632,892
Number of Sequences: 59808
Number of extensions: 189468
Number of successful extensions: 641
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)