Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311H03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7903| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 28   4.1  
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)           27   7.1  

>SB_7903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 93  MGGTAVQWRTCRQAKGPVVAIVPQNRQEHTTRRRDTPVTAVV 218
           MG T V W  C Q     V I+  +  EHT   R   +++VV
Sbjct: 4   MGRTLVVWLLCLQLTSLTVGILVTSTHEHTMTERIQDISSVV 45


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 521 NYSMHFVELHQLPFSFFYLFPFVCDQYHLKILY 423
           NY      LH+ P    +L PF+  QYH  I Y
Sbjct: 354 NYHPAISYLHRPPVPSSHLLPFIAHQYHPAISY 386


>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 512 MHFVELHQLPFSFFYLFPFV-CDQYHLKILYL 420
           MH   LH + F+ FYLFP +     +LKI+ L
Sbjct: 319 MHEKILHPIDFTLFYLFPLIFTAAVYLKIIRL 350


>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
          Length = 680

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 263 LMPNIEHYSLVPLQVHYCCHWSIPSASRVFLSVLRHYCYHWPLRLP 126
           L  N+  YS+   Q     HW   +  ++  S+L   C+HW +  P
Sbjct: 279 LFYNLPKYSIFE-QATDGIHWGFKAHRKMSNSILTVVCHHWKICFP 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,350,593
Number of Sequences: 59808
Number of extensions: 261485
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)