Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311F12f
         (397 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    30   0.010
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   3.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   7.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   7.7  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 0.010
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +1

Query: 43  FDDXAEFRQKELFSLRDTTQEDPKEIEAAKYNLNYIALDGNIGCMVNGAGLAMATMDIIK 222
           F    E ++K + SLR+T +E+P + +  + + N +  +G  G    G G   A      
Sbjct: 75  FSVLCEIKEKTVLSLRNTQEEEPPDPQLMRLD-NMLIAEGVAG-PEKGGGAGAAASGSAA 132

Query: 223 LYGGDPANFLD 255
              G P N ++
Sbjct: 133 AQAGQPDNAIE 143


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 217 IKLYGGDPANFLDVGGGATXQAVS 288
           + L GGDPA+      G T  ++S
Sbjct: 155 VGLVGGDPASSPGAAAGRTGNSLS 178


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 262 GGATXQAVSEAFKIILSDPKVTAILVN 342
           G  +   +  +  IILSDP    + +N
Sbjct: 129 GNQSTPGIKLSINIILSDPNTNKLKLN 155


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 334 LVNIFGGIMRCDVXAEGIIN 393
           +V  F GI  CD+    I N
Sbjct: 256 IVGTFSGIFLCDLIRREIAN 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,266
Number of Sequences: 336
Number of extensions: 1628
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)