Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311E04f
(422 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 127 4e-30
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 126 6e-30
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 126 6e-30
At4g17840.1 68417.m02661 expressed protein 29 0.98
At3g54630.1 68416.m06044 expressed protein weak similarity to re... 29 1.7
At4g13965.1 68417.m02160 F-box family protein contains F-box dom... 27 4.0
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 4.0
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 4.0
At1g07490.1 68414.m00802 expressed protein 27 4.0
At5g13030.1 68418.m01494 expressed protein contains Pfam profile... 27 5.2
At4g26370.2 68417.m03792 antitermination NusB domain-containing ... 27 5.2
At4g26370.1 68417.m03791 antitermination NusB domain-containing ... 27 5.2
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 5.2
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 27 6.9
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored... 26 9.1
At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SD... 26 9.1
At3g26840.1 68416.m03357 esterase/lipase/thioesterase family pro... 26 9.1
At3g05700.1 68416.m00637 drought-responsive family protein conta... 26 9.1
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 127 bits (306), Expect = 4e-30
Identities = 62/98 (63%), Positives = 71/98 (72%)
Frame = +1
Query: 1 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
DRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS
Sbjct: 109 DRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVS 168
Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 294
+KWGFTK+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 169 RKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 126 bits (304), Expect = 6e-30
Identities = 61/98 (62%), Positives = 69/98 (70%)
Frame = +1
Query: 1 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
DRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS
Sbjct: 109 DRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVS 168
Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 294
+KWGFTK+ R E+ KLR R+ DG ++ HGPL
Sbjct: 169 RKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 126 bits (304), Expect = 6e-30
Identities = 61/98 (62%), Positives = 71/98 (72%)
Frame = +1
Query: 1 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 180
DRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS
Sbjct: 109 DRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVS 168
Query: 181 KKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 294
+KWGFTK+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 169 RKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At4g17840.1 68417.m02661 expressed protein
Length = 422
Score = 29.5 bits (63), Expect = 0.98
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +2
Query: 74 SPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 247
S S C+ +GG SS+L P+ S D+K+ + +R+ +++ LRS +K ++S
Sbjct: 19 SSSSWCSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75
>At3g54630.1 68416.m06044 expressed protein weak similarity to
retinoblastoma-associated protein HEC [Homo sapiens]
GI:2501873
Length = 568
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 299 LGGRFRL--RSSMYNLINTFYSXXXXXXNSRGGPVPN 403
LGGR RSSM IN F S + RG PVP+
Sbjct: 52 LGGRGASDDRSSMIRFINAFLSTHNFPISIRGNPVPS 88
>At4g13965.1 68417.m02160 F-box family protein contains F-box domain
Pfam:PF00646
Length = 294
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 152 SPDVKRSTYQ-RSGVSQSMN-VMSLRSCVK-RAASLMTAALCSTARNMDLSTLGGRFRLR 322
S +VKR+ ++ V S++ ++ L C A L+ A R + L GGRF +
Sbjct: 71 SKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKLIGIAFACNLRKLVLEVDGGRFSIP 130
Query: 323 SSMYN 337
S+YN
Sbjct: 131 ESLYN 135
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 65 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 193
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 65 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 193
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 119 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 220
SS C+VPSSSS + RS+ ++ S + SL
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81
>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
PF02696: Uncharacterized ACR, YdiU/UPF0061 family
Length = 633
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 127 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 228
A+ R KF + +SKK G TKY ++ KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488
>At4g26370.2 68417.m03792 antitermination NusB domain-containing
protein contains Pfam profile: PF01029 NusB family
Length = 248
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 119 SSRLCAVPSSSSPDVKRST-YQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN 283
SS LC S+ SPD RS + + N++SLR+ KR++S S R+
Sbjct: 13 SSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRS 68
>At4g26370.1 68417.m03791 antitermination NusB domain-containing
protein contains Pfam profile: PF01029 NusB family
Length = 301
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 119 SSRLCAVPSSSSPDVKRST-YQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN 283
SS LC S+ SPD RS + + N++SLR+ KR++S S R+
Sbjct: 13 SSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRS 68
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 67 CEHVLQYPEACQTHHAS 17
C+ +LQ+P CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277
>At5g03800.1 68418.m00347 exostosin family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF03016 exostosin family,
PF01535 PPR repeat
Length = 1388
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 327 EDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETP 187
ED ++P E S+ RA+L + + S ++ ++ KLI ETP
Sbjct: 680 EDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETP 726
>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica};
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 568
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 46 GTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKF-PGRQKIYVSKKWGFTKYERDEFE 222
GTV + +PI ++ + +EA FK PG +K+Y K G + EF+
Sbjct: 90 GTVEARSVVEPIRNIARKQNVEMSFLEA---ECFKIDPGSKKVYCRSKQGVNSKGKKEFD 146
>At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SDR)
family protein contains Pfam profile: PF00106 short
chain dehydrogenase
Length = 298
Score = 26.2 bits (55), Expect = 9.1
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +2
Query: 68 LDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 247
L SPS A + R R S L SSS P+ K G S+ + + +R ++ +
Sbjct: 12 LVSPSMAVAALK--RMRVSGLATSSSSSVPNWKGGVSMVQGASRGIGLEFVRQLLENNKN 69
Query: 248 LMTAALCSTARN-MDLSTLGGRFRLR 322
A C + LS L RF R
Sbjct: 70 GYVVATCRNPKEATSLSDLKNRFSER 95
>At3g26840.1 68416.m03357 esterase/lipase/thioesterase family
protein contains Pfam profile PF03096: Ndr family
Length = 701
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 95 LVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAA 262
L + HR + + +V S+SSP S QR + N ++ V+ S + AA
Sbjct: 24 LTSASNHRLTAIKSVTSTSSPPTPSSGVQRRRKNNDENRATVAKVVENPYSKVEAA 79
>At3g05700.1 68416.m00637 drought-responsive family protein contains
similarity to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 181
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 97 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 237
SD W ++ A RR + FP R ++ GF E D E+ REE
Sbjct: 3 SDSWSDRLASATRRYQLAFPSRSDTFL----GFE--EIDGEEEFREE 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,785,198
Number of Sequences: 28952
Number of extensions: 195397
Number of successful extensions: 480
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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