Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing...    28   3.3  
At4g23330.1 68417.m03362 eukaryotic translation initiation facto...    27   5.8  
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea...    27   5.8  
At2g26710.1 68415.m03204 cytochrome P450, putative                     27   5.8  
At4g13320.1 68417.m02082 expressed protein                             27   7.7  
At1g11750.1 68414.m01348 ATP-dependent Clp protease proteolytic ...    27   7.7  

>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
           protein / CBS domain-containing protein similar to
           SP|Q47334 Polysialic acid capsule expression protein
           kpsF {Escherichia coli}; contains Pfam profiles PF01380:
           sugar isomerase (SIS) domain, PF00571: CBS domain
          Length = 350

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 236 IRVRIPLKTSL*IYCPFYLVVFVEALVQVAFVEEIAVAL 120
           + V +PL+  L   CPF L       +Q+ F + IAVAL
Sbjct: 162 MNVHLPLQREL---CPFNLAPVTSTAIQMVFGDTIAVAL 197


>At4g23330.1 68417.m03362 eukaryotic translation initiation
           factor-related contains weak similarity to
           Swiss-Prot:Q9LD55 eukaryotic translation initiation
           factor 3 subunit 10 (eIF-3 theta) (Eukaryotic
           translation initiation factor 3 large subunit) (eIF3a)
           (p114) [Arabidopsis thaliana]
          Length = 259

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = -3

Query: 474 ESSLEAITESGR*WAADCACWIHVVAVRKCSSI*SQIEKNSSKFFSNLGTGLSIPFCVLE 295
           E++L+A T+  R   +    WI   +  K   I   + KNS   F +L   LS+      
Sbjct: 93  ENALDAATKGNRYINSCLRLWITYFSYIKILIIKLMMPKNSKLTFRSLSKSLSLFGSSSP 152

Query: 294 SAL*FWCNIWAADLSVIGIDSRKDPIKD 211
           + L  W  +W   +SV    S   P+ D
Sbjct: 153 ARLNLWF-LWIGFVSVRTESSTISPLAD 179


>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (5 copies, 2 below cutoff); related to
           LACK protective antigen (GI:13625467) [Leishmania
           donovani]
          Length = 764

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 284 HNADSNTQKGMDNPVPRFEKNLEEFFSICDQMELHL-RTATTCIQQAQSAAHYLPLSVI 457
           H+ D  T K M+ P P       EFF +C    +H+   A+  +   ++  H+  L  +
Sbjct: 141 HSGD--TLKEMEEPKPIVLSPSGEFFGVCHNCSIHIWNVASEHLMPKETTLHHTELITV 197


>At2g26710.1 68415.m03204 cytochrome P450, putative 
          Length = 520

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 434 GRLIALAGYTLLLFANVVPFDHRLRKTLLSFFQI*EQDYPYLFVYW 297
           G +  L G  L   ++ +PF H +   +LSF+    + Y   F+ W
Sbjct: 57  GNVKELVGMMLKASSHPMPFSHNILPRVLSFYHHWRKIYGATFLVW 102


>At4g13320.1 68417.m02082 expressed protein 
          Length = 216

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 251 LKSAAQILHQ--NHNADSNTQKGMDNPVPRF 337
           ++ +A +LHQ  NH+ D  TQ+G  N +  F
Sbjct: 60  IEVSAILLHQEDNHHHDQQTQQGSSNTITNF 90


>At1g11750.1 68414.m01348 ATP-dependent Clp protease proteolytic
           subunit (ClpP) identical to ATP-dependent Clp protease
           proteolytic subunit GI:2827888 from [Arabidopsis
           thaliana]; contains Pfam profile PF00574: Clp protease;
           contains TIGRfam profile TIGR00493: ATP-dependent Clp
           protease, proteolytic subunit ClpP
          Length = 271

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 382 TTFANSNNVYPASAISRPLSAALGDSLKTRLWTYHAGNDIKL 507
           T+F + N   P   I   L +  GDSLK  L +  +G+ IK+
Sbjct: 24  TSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKI 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,298,642
Number of Sequences: 28952
Number of extensions: 190678
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)