Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1053.Seq
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24280.1 68418.m02856 expressed protein ; expression supporte...    29   0.44 
At5g59390.1 68418.m07442 XH/XS domain-containing protein contain...    25   7.1  
At4g01180.1 68417.m00156 XH/XS domain-containing protein contain...    25   7.1  

>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 188  IXTSVINDFQSPCIHKCSAENDAALHEKMITLAFI 84
            + TS+ +D +S C H  S E+D++  E  I  AF+
Sbjct: 1155 LDTSIHHDEKSGCFHTMSIESDSSSVESAIRYAFV 1189


>At5g59390.1 68418.m07442 XH/XS domain-containing protein contains
           Pfam domain PF03469: XH domain and PF03468: XS domain
          Length = 561

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 125 DAALHEKMITLAFIQCRSRDRY 60
           + ALHEKM+TLA  +  + D Y
Sbjct: 373 ETALHEKMMTLARKERATNDEY 394


>At4g01180.1 68417.m00156 XH/XS domain-containing protein contains
           Pfam domain PF03469: XH domain and PF03468: XS domain
          Length = 554

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 125 DAALHEKMITLAFIQCRSRDRY 60
           + ALHEKM+TLA  +  + D Y
Sbjct: 363 ETALHEKMMTLARKERATNDEY 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,750,455
Number of Sequences: 28952
Number of extensions: 70227
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)