Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1050.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18750.1 68416.m02380 protein kinase family protein contains ...    27   7.0  
At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim...    27   9.3  
At3g49320.1 68416.m05392 expressed protein contains Pfam profile...    27   9.3  

>At3g18750.1 68416.m02380 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 567

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 KNETLTNFCAIFWYSHLKHYEMCHWKMNMSQI 328
           KN+T+     +F    L+HY   H K+NM  +
Sbjct: 100 KNKTVNIITELFTSGSLRHYRKKHRKVNMKAV 131


>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
           similar to importin alpha 2 [Capsicum annuum]
           GI:13752562; contains Pfam profiles PF01749: Importin
           beta binding domain, PF00514:
           Armadillo/beta-catenin-like repeat; non-consensus GG
           donor splice site at exon 1 and 6; CT acceptor splice
           site at exon 2
          Length = 444

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 245 LTNFCAIFWYSHLKHYEMCHWK 310
           + N C IFW + ++   +C WK
Sbjct: 418 VVNHCVIFWCALIQGLSLCVWK 439


>At3g49320.1 68416.m05392 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 354

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 275 CTKIWHKNLLVSRSCNF 225
           C++IW+++L + RS NF
Sbjct: 9   CSRIWNRSLFLKRSSNF 25


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,743
Number of Sequences: 28952
Number of extensions: 159761
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)