Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1044.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    27   5.3  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   9.3  

>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -3

Query: 302 HSAERPVVRSYHPRDYPERL*GRSQPSRIRQGYAHCGAPRVGRL*TMXLY*SRFAFKTRD 123
           ++ E P      P  Y E+L    Q  R+R G    G        T  +   R A  T  
Sbjct: 348 YTLEDPTDLKASPAKYLEKL-RELQSIRVR-GNIPLGIGLESHFSTPNIPYMRSALDTLG 405

Query: 122 ATSKPIWIAEID 87
           AT  PIW+ EID
Sbjct: 406 ATGLPIWLTEID 417


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 240 RPKPA*PNPARICSLWSPESREALNNVXLLVAFRIQNAR-RDVEAHLD 100
           RPK   P  A + ++WSP S  A +    +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,147,748
Number of Sequences: 28952
Number of extensions: 162124
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)