Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1039.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   6e-07
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   1e-06
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       36   0.019
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       36   0.019
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.30 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.30 
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 39  KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 146
           ++ A WLILPVVICLSQRLSHACLS S      RMA
Sbjct: 126 RRVAIWLILPVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 39  KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 146
           ++ A WLILPVVICLSQRLSHACLS S      RMA
Sbjct: 102 RRVAIWLILPVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 39  KKRAPWLILPVVICLSQRLS 98
           ++ A WLILPVVICLSQRLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 39  KKRAPWLILPVVICLSQRLS 98
           ++ A WLILPVVICLSQRLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 473 PFLRLPLXNRTLIPRYP 423
           PFLRLPL NRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 73  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 207
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 73   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 207
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 131 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 247
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 319  WITFADRMVKYRRRIFQM 372
            W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,883
Number of Sequences: 59808
Number of extensions: 256581
Number of successful extensions: 608
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)