Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1032.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    91   3e-19
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            91   3e-19
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf...    25   0.66 
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   1.1  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 90.6 bits (215), Expect = 3e-19
 Identities = 37/58 (63%), Positives = 48/58 (82%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 255
           NPLFE+RPK F IG  + P +DLSR++ WPK IR+QRQK +L++RLKVPP +NQFT+T
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 77


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 90.6 bits (215), Expect = 3e-19
 Identities = 37/58 (63%), Positives = 48/58 (82%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 255
           NPLFE+RPK F IG  + P +DLSR++ WPK IR+QRQK +L++RLKVPP +NQFT+T
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 78


>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 505

 Score = 25.4 bits (53), Expect(2) = 0.66
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 147 LVQICXMAQVYPHPASEGCTSASSESAPSDQP 242
           L+QI  +  ++PH  S G ++       S+QP
Sbjct: 307 LIQITSLVYIFPHSLSLGVSTRVGNELGSNQP 338



 Score = 23.0 bits (47), Expect(2) = 0.66
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  QENCESSLREEAKELC 116
           +E CE S+RE  K LC
Sbjct: 253 EETCEDSVREWKKLLC 268


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 338  QPLXPGCFSLRPVFLQNLEKALSCSLVQV 252
            QP  P CF L P  L  LE + +CS++ +
Sbjct: 992  QPNTPQCFLLTPKLLPELEYSEACSILNI 1020


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,376,874
Number of Sequences: 28952
Number of extensions: 132035
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)