Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0577.Seq
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    32   0.18 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.2  
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    28   2.9  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    28   2.9  
At4g38560.1 68417.m05459 expressed protein                             28   3.8  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   6.7  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 260 LSDSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 159
           +SDS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 221 VSDSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 436 RLLPSLXVVAVSQAPSPESNPDSPLPVTTMVVAE 335
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 199 DQNQSTEGLASE--VVNFDESDNFCRSHG 279
           +Q+Q T G ASE  V+ FDE D  C+S G
Sbjct: 307 EQDQRTLGDASELHVIIFDEIDAICKSRG 335


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 427 PSLXVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 320
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 6   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 149
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   VVICLSQRLSHACLSASRIKAIPRMAQY 87
           ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 18  IISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,359
Number of Sequences: 28952
Number of extensions: 207005
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)