Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30732
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1B2E0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    35   1.8  
UniRef50_A0DDE3 Cluster: Chromosome undetermined scaffold_46, wh...    34   4.1  
UniRef50_Q2H947 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q05FH2 Cluster: Cytochrome O ubiquinol oxidase subunit ...    33   5.4  
UniRef50_Q7UJJ6 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  
UniRef50_A0EFN9 Cluster: Chromosome undetermined scaffold_94, wh...    33   9.4  

>UniRef50_A1B2E0 Cluster: Putative uncharacterized protein; n=1;
           Paracoccus denitrificans PD1222|Rep: Putative
           uncharacterized protein - Paracoccus denitrificans
           (strain Pd 1222)
          Length = 335

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 585 QGQRGSGNEIRNKRGPQHRAARRLRHRG 668
           +G+RG G  +R  RGPQHR   R R RG
Sbjct: 285 RGRRGGGRVLRKHRGPQHRQQCRKRDRG 312


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 15/19 (78%), Positives = 18/19 (94%), Gaps = 1/19 (5%)
 Frame = -2

Query: 56  KCSEELFQ-IPSSRFYHRT 3
           +CSEELF+ IP+SRFYHRT
Sbjct: 890 ECSEELFEMIPASRFYHRT 908


>UniRef50_A0DDE3 Cluster: Chromosome undetermined scaffold_46, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_46,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 466

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 189 VLNELHFFLSITFSVLFLYSYIDSTKVLFIRILKVKHNALSNQNLLCALLEIFTFR 356
           +L  L  F++I    L     ++  K  FI +LK+  + LSN NL   LL + T R
Sbjct: 223 ILGSLILFIAILTQCLVTEDPVEEEKTNFISVLKLSFSLLSNSNLRFLLLFLLTRR 278


>UniRef50_Q2H947 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 2748

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 252 IDSTKVLFIRILKVKHNALSNQNLLCALLEIFTFRSFHIVHSPIYRI 392
           +DS+  L + +L++++N   N  L CA  E+  + SFH  H+  + I
Sbjct: 547 VDSSLTLMLSLLRLRNNMFPNAILTCAAAELI-YASFHATHATPFDI 592


>UniRef50_Q05FH2 Cluster: Cytochrome O ubiquinol oxidase subunit
           III; n=1; Candidatus Carsonella ruddii PV|Rep:
           Cytochrome O ubiquinol oxidase subunit III - Carsonella
           ruddii (strain PV)
          Length = 171

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +3

Query: 108 NHFIFLLD---IIKSSFMC*KIIIRD*IVTVLNELHFFLSITFSVLFLYSYIDSTKVLFI 278
           N+ I L++   ++ SSF+  KII +       N  ++FL+I FS+LFL   +   K LF 
Sbjct: 44  NYRIILIETILLLLSSFLTIKIINKS------NIKYYFLNIFFSILFLIIELKDIKHLFF 97

Query: 279 RILKVK-HNALSNQNLL 326
             L  K +N LSN  L+
Sbjct: 98  LNLSFKLNNYLSNYYLI 114


>UniRef50_Q7UJJ6 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 77

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 614 PQ*TWPTTPRSSPATSQRVPMFPPAWNCRI 703
           P  TWPTTP S PA   R P    +W  R+
Sbjct: 24  PGTTWPTTPPSQPAALARPPHRTNSWRIRL 53


>UniRef50_A0EFN9 Cluster: Chromosome undetermined scaffold_94, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_94,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 525

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +3

Query: 201 LHFFLSITFSVLFLYSYIDSTKVLFIRILKVKHNALSNQNLLCALLEIFTFRSFHIVHSP 380
           L FFLS  F + F      +T  LFI  LK K N +    ++  +   F F+S HIV   
Sbjct: 344 LDFFLS-NFIIAFFELLAYATTDLFITKLKRKKNIIGGFFIVGIMSLYFIFKSDHIVFRI 402

Query: 381 IYRIKKTVICL 413
              + + +IC+
Sbjct: 403 FQGLMRFLICV 413


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,234,785
Number of Sequences: 1657284
Number of extensions: 11254796
Number of successful extensions: 29475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29422
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)