Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30731
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   3e-07
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   3e-06
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                29   1.2  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     27   4.9  
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)        27   8.6  

>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +2

Query: 89  STAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYD 253
           ST +MPP D+ P PY G S+ + +Q++  Y+ P++   YK P+ +     +W+ D
Sbjct: 31  STLEMPPCDYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWIQD 85


>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +2

Query: 245 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVE 412
           ++D  GKRY+D       V+ GHCHP++  AL+DQ  +L  T+  + +  + E+ E
Sbjct: 1   MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEFQE 56


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 242 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 352
           ++ D D KRY+D  G    + +GH HP+V  A+++QL
Sbjct: 43  YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 39  KWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 155
           KWL  ++N A  SS  T   K  +  S PD T+    NK
Sbjct: 716 KWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNK 754


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 242 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKD 346
           ++ D DG   LD++  I ++ +G+ HP +  A++D
Sbjct: 157 YVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD 191


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 21   QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQ 191
            ++      L+EEQ   S S   T R  C    S  +RT D      N+ KE  C+L+
Sbjct: 1355 EEMKNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKELRCQLE 1411


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +2

Query: 215  VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 325
            VLLT G  Q L     KR  D    IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 133 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 312
           HG + PT  T+   L+A+     +  AG+ HP  HAV     +  +P +  W    LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551

Query: 313 LS 318
           ++
Sbjct: 552 VA 553


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 104 PPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGH 235
           PPT + P+PY    Y Q    +G Y P     AY +P    QG+
Sbjct: 154 PPTSYPPQPYPAQPYPQ----QG-YPPQPPPQAYPQPGYPPQGY 192


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 253 QRRQEIPGSVRWNRHRLRGPLSSESKCSPQR 345
           +R QE+ G V  +R  +  P +SES+C   R
Sbjct: 30  ERVQELQGVVTTDRETIDDPNTSESRCQENR 60


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 221 LTQGHMQWLYDNDGKRY 271
           L QG+M W ++N GK Y
Sbjct: 670 LAQGNMTWCWENRGKEY 686


>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
          Length = 847

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 38  EMANRGTKLCFDIVRTYSTAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPV 217
           E  +R   + F   + +ST  + P+   P PY   +YQQ+ + +G   P  + +  +   
Sbjct: 786 EHKDRPNDVTFGCFQHFSTISLMPS---PLPYVMQNYQQLGESEGSLTPEGLISKLRSCT 842

Query: 218 L 220
           L
Sbjct: 843 L 843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,782,839
Number of Sequences: 59808
Number of extensions: 372400
Number of successful extensions: 1098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)