Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30731
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p... 115 2e-26
At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p... 101 2e-22
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 100 5e-22
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 56 1e-08
At1g80600.1 68414.m09457 acetylornithine aminotransferase, mitoc... 48 3e-06
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm... 38 0.002
At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutas... 31 0.33
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas... 29 1.00
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 28 2.3
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 3.0
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 27 7.0
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 27 7.0
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 27 7.0
At5g16240.1 68418.m01897 acyl-[acyl-carrier-protein] desaturase,... 26 9.3
At4g35890.1 68417.m05097 La domain-containing protein contains P... 26 9.3
At3g02630.1 68416.m00254 acyl-[acyl-carrier-protein] desaturase,... 26 9.3
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 26 9.3
>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 476
Score = 115 bits (276), Expect = 2e-26
Identities = 51/108 (47%), Positives = 71/108 (65%)
Frame = +2
Query: 101 MPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDL 280
+PP PRPY GPS +V Q + ++ PS+ + Y+KP+ + +G MQ+LYD G+RYLD
Sbjct: 41 IPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDA 100
Query: 281 FGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 424
F GIVTVS GHCHP + A+ +Q +L H T +Y H I ++ E LAA
Sbjct: 101 FAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAA 148
>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 481
Score = 101 bits (243), Expect = 2e-22
Identities = 43/109 (39%), Positives = 71/109 (65%)
Frame = +2
Query: 98 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLD 277
KMPP ++ P PY GPS ++ + ++ P++ + Y P+ + + MQ+++D +G+RYLD
Sbjct: 45 KMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLD 104
Query: 278 LFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 424
FGGI TVS GHCHP+V ++ QL ++ H+T LY + I ++ E L +
Sbjct: 105 AFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVS 153
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 100 bits (239), Expect = 5e-22
Identities = 45/110 (40%), Positives = 67/110 (60%)
Frame = +2
Query: 95 AKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYL 274
A++PP + P PYTGPS + + ++ PS+ Y+KP+ + G MQ+L+D G+RYL
Sbjct: 41 ARLPPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYL 100
Query: 275 DLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 424
D F GI V+ GHCHP V + +Q+ L H T LY + I ++ E LA+
Sbjct: 101 DAFAGIAVVNCGHCHPDVVEPVINQIKRLQHPTVLYLNHAIADFSEALAS 150
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 56.0 bits (129), Expect = 1e-08
Identities = 24/77 (31%), Positives = 45/77 (58%)
Frame = +2
Query: 188 SITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWH 367
S N + PV+ ++ + ++D +GKRY+D V+ GHCHPK+ AL++Q++ L
Sbjct: 51 SAHNYHPVPVVFSRANGSTIWDPEGKRYIDFLAAYSAVNQGHCHPKIMKALQEQVEKLTL 110
Query: 368 TTNLYRHPKIYEYVEQL 418
++ + + K + E+L
Sbjct: 111 SSRAFYNDKFPVFAERL 127
>At1g80600.1 68414.m09457 acetylornithine aminotransferase,
mitochondrial, putative / acetylornithine transaminase,
putative / AOTA, putative / ACOAT, putative similar to
SP|O04866 Acetylornithine aminotransferase,
mitochondrial precursor (EC 2.6.1.11) (ACOAT)
(Acetylornithine transaminase) (AOTA) {Alnus glutinosa};
contains Pfam profile PF00202: aminotransferase, class
III
Length = 457
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +2
Query: 206 KKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYR 385
+ PV+L+ G L+D +GK YLD GI ++GH P A+ +Q VL H +N+Y
Sbjct: 75 RAPVVLSSGKGCKLFDPEGKEYLDCASGIAVNALGHGDPDWLRAVTEQAGVLAHVSNVYY 134
Query: 386 HPKIYEYVEQLAA 424
E ++L A
Sbjct: 135 TIPQIELAKRLVA 147
>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
gamma-amino-N-butyrate transaminase / GABA transaminase
/ beta-alanine--oxoglutarate aminotransferase identical
to gamma-aminobutyrate transaminase subunit precursor
[Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
contains Pfam profile PF00202: aminotransferase, class
III; identical to cDNA gamma-aminobutyrate transaminase
subunit precursor, nuclear gene for mitochondrial
product GI:14030434
Length = 504
Score = 38.3 bits (85), Expect = 0.002
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +2
Query: 212 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVL 361
P+++ + ++YD+ GK+YLD G+ ++G P++ +A +QL+ L
Sbjct: 70 PLVIAKSEGSYVYDDTGKKYLDSLAGLWCTALGGNEPRLVSAAVEQLNTL 119
>At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutase 1
(GSA 1) / glutamate-1-semialdehyde aminotransferase 1
(GSA-AT 1) identical to GSA 1 [SP|P42799]
Length = 474
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 209 KPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 352
+PVL+ ++D DG Y+D G +GH +V AAL + +
Sbjct: 81 QPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETM 128
>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
(GSA 2) / glutamate-1-semialdehyde aminotransferase 2
(GSA-AT 2) identical to GSA2 [SP|Q42522]
Length = 472
Score = 29.5 bits (63), Expect = 1.00
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 209 KPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 352
+PV++ + D DG Y+D G +GH +V AAL + +
Sbjct: 79 QPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETM 126
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 86 YSTAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLL 223
Y+ +PP + P Y P+ VY P Y KP LL
Sbjct: 75 YTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLSPPVYTKPTLL 120
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 250 RQRRQEIPGSVRWNRHRLRGPLSSESKCSPQRSTRCIVAYDQPVQTSE 393
R RR+E V R E + P+R R + AY P++ +E
Sbjct: 134 RSRREEKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQMPLKATE 181
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 98 KMPPTDFV---PRPYTGPSYQQVEQMKGVYMPPSIT 196
++PP FV PY P+ V+Q G +PP +T
Sbjct: 29 ELPPNRFVFAAVPPYLNPNPNYVDQYPGNCLPPPVT 64
>At3g06850.2 68416.m00813 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 286 WNRHRLRGPLSSESKCSP 339
W HR P SS S CSP
Sbjct: 7 WRSHRFLRPFSSSSVCSP 24
>At3g06850.1 68416.m00812 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 286 WNRHRLRGPLSSESKCSP 339
W HR P SS S CSP
Sbjct: 7 WRSHRFLRPFSSSSVCSP 24
>At5g16240.1 68418.m01897 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Sesamum
indicum GI:575942, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 394
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 107 PTDFVPRPYTGPSYQQVEQMK 169
PTDF+P P + Y QV++++
Sbjct: 94 PTDFLPEPESEGFYDQVKELR 114
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 26.2 bits (55), Expect = 9.3
Identities = 27/95 (28%), Positives = 37/95 (38%)
Frame = +1
Query: 94 GQNAADGFRAQTVHGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIP 273
GQN +GF +Q GT P+ R + R+ + NH + SH G RR +
Sbjct: 239 GQNQKNGFASQNHGGTENPSQRDSYRNQNG--NHHQ------SHGG--------RRNQEH 282
Query: 274 GSVRWNRHRLRGPLSSESKCSPQRSTRCIVAYDQP 378
G+ W R E QR T V + P
Sbjct: 283 GNQNWTFQRSFN--GREGNAQSQRGTPAFVRHPSP 315
>At3g02630.1 68416.m00254 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Sesamum
indicum GI:575942, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 396
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 107 PTDFVPRPYTGPSYQQVEQMK 169
PTDF+P P + Y QV++++
Sbjct: 96 PTDFLPEPESEGFYDQVKELR 116
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 336 PSKINSMYCGIRPTCTDIRKSM 401
PSKI+S++CG + C K++
Sbjct: 90 PSKISSIFCGTQDKCAACEKTV 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,848
Number of Sequences: 28952
Number of extensions: 234275
Number of successful extensions: 722
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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