Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30729
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)                 29   2.9  
SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)                     29   3.8  
SB_13670| Best HMM Match : Dynamin_M (HMM E-Value=1.1)                 29   3.8  
SB_55467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)
          Length = 239

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 5   GSTVNFWIMEPIYRWIGNYYIG 70
           G  + FW +E + RW+GN  +G
Sbjct: 139 GRIIQFWAVEEVCRWLGNQGLG 160


>SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)
          Length = 523

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 546 LGKFSTSDTRSNNICYSVFLYNILNRSKKKLC 451
           L   + S   + NI  S F YN+ N+ KKK+C
Sbjct: 411 LNVITESIEANKNILQSKFTYNLTNQMKKKVC 442


>SB_13670| Best HMM Match : Dynamin_M (HMM E-Value=1.1)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 546 LGKFSTSDTRSNNICYSVFLYNILNRSKKKLC 451
           L   + S   + NI  S F YN+ N+ KKK+C
Sbjct: 85  LNVITESIEANKNILQSKFTYNLTNQMKKKVC 116


>SB_55467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 169 CTLVTQHHSIPKMFNVDTLRDLTYK*SNS*TLI 71
           CTL  + H++ +  N + ++DL YK +   T+I
Sbjct: 24  CTLTQEQHNLLRQENKNLIKDLLYKIAKEHTII 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,110,162
Number of Sequences: 59808
Number of extensions: 378610
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)