Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30726
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)             177   6e-45
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   2e-26
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)            89   4e-18
SB_54862| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)               30   1.7  
SB_22472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   29   3.0  
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)                   29   4.0  
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   7.0  
SB_33022| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)                    28   7.0  
SB_24177| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-16)                 28   9.2  
SB_22396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)         28   9.2  
SB_57841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 28   9.2  
SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)            28   9.2  
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score =  177 bits (432), Expect = 6e-45
 Identities = 91/190 (47%), Positives = 127/190 (66%), Gaps = 6/190 (3%)
 Frame = +3

Query: 36  RVLVLYTGGTFGMLKNEKGVLVPQKDIESVIRRLPQLHDDAYW--KNNLAGTDKK----D 197
           RVLVLYTGGT GM K + G       ++  I+RLP L+D+ +   + N   T  +    +
Sbjct: 7   RVLVLYTGGTIGMEKTQSGYQPKTGFLQKQIKRLPMLYDEDFMATRKNQQQTQSESLELE 66

Query: 198 YLALPDGKDTDDKILYHIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDT 377
            LA+P     + ++LY+I EY  +KDSS+  I+DW+ MA DI++ Y  Y+GFVV+HGTDT
Sbjct: 67  ELAMPVSP-YNVRVLYYIKEYVPIKDSSNLMIEDWVMMALDIQKHYDSYNGFVVIHGTDT 125

Query: 378 TAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFGA 557
            AY  S LSFM+E +GKT+VLTG+QVPI++ R+DG +NLL A++IA    IPEV ++FG 
Sbjct: 126 MAYTASALSFMMENLGKTIVLTGSQVPIYEQRNDGRDNLLGALMIAGHYIIPEVGLYFGG 185

Query: 558 KLFRGTRVKK 587
            L+RG R  K
Sbjct: 186 CLYRGNRATK 195



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 569 GN*SKKVSNTRIYAFDTPNFPPLLEAKTTLEV 664
           GN + KV      AFD+PN PPL+     ++V
Sbjct: 190 GNRATKVDAGSFSAFDSPNLPPLVTMTVKIDV 221


>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score =  116 bits (280), Expect = 2e-26
 Identities = 57/115 (49%), Positives = 73/115 (63%)
 Frame = +3

Query: 261 DELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVL 440
           D +K S D  +  WI +A  IK  Y  Y GFV+LHGTDT  Y  S LSFM E +GK+V+ 
Sbjct: 161 DLVKHSQDMDMKGWIAIANIIKENYEKYSGFVILHGTDTLPYTASALSFMFENLGKSVIF 220

Query: 441 TGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFGAKLFRGTRVKKYRTRVF 605
           TG+Q PI +  +DG +NL  A++IA    IPEVTV+F  KL+RG R  K  +R F
Sbjct: 221 TGSQSPINEHLNDGRDNLFGALMIAGHHVIPEVTVYFHGKLYRGNRCLKVDSRSF 275


>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
          Length = 231

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
 Frame = +3

Query: 300 WIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSD 479
           W ++A  I   Y  +DGFVVLHG+DT +Y  S LSFM E + K ++ TG+Q+PI   R+D
Sbjct: 6   WQQIADIIDENYMRFDGFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTD 65

Query: 480 GNNNLLCAVLIAATQR-----IPEVTVFFGAKLFRGTRVKKYRTRVF 605
              NL+ A+ IA+ Q      I EV ++F  KL+RG R  K     F
Sbjct: 66  AKENLITAIQIASLQEKGEATIQEVGLYFEYKLYRGNRTTKISAEHF 112



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 569 GN*SKKVSNTRIYAFDTPNFPPLLEAKTTLEVDPKMLI 682
           GN + K+S     AF +PNFP L E+   L+V+  +L+
Sbjct: 101 GNRTTKISAEHFNAFSSPNFPELAESGVHLKVNKDVLL 138


>SB_54862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 596 TRIYAFDTPNFPPLLEAKTTLEVDPKMLIHP-PGSVPNECRLHDQLSRKGY 745
           TR Y F    FPP  E  TT+++DP  L+ P   ++  E  L D++    Y
Sbjct: 48  TRSYEFIA--FPPDSEEGTTVDLDPACLVRPRRNAICQELELQDKVEESRY 96


>SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)
          Length = 567

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +3

Query: 6   NTSGKMAEIKRVLVLYTGGTFGMLKNEKGVL-VPQKDIESVIRRLP---QLHDDAYWKNN 173
           N   K A+   VLV+        L+ E G L V  ++ + +IRRL    +LHD      N
Sbjct: 340 NVEAKGAD-HEVLVVEAHSAVDELRREVGRLNVKLQESDDIIRRLERQLELHDQGTGLRN 398

Query: 174 LAGTDKKDYLALPDGKDTDDKILYHI 251
           LA  D ++ L    G   D  +L+ I
Sbjct: 399 LAIADLEERLNTLQGTTFDSVLLWKI 424


>SB_22472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 75  LKNEKGVLVPQKDIE-SVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYH 248
           LKN+KG ++P KD++  ++ ++PQ   D   K  +       +L L  G+    K+L H
Sbjct: 28  LKNDKGAVIPIKDLDRDIVIKIPQKKSD---KPTV--VSDSGHLFLKPGEIRSHKVLIH 81


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 328 DFTMTTMDSWFCTAPTQLRTV 390
           D T    DSW C+ PT+LR V
Sbjct: 445 DVTHAQFDSWICSQPTRLRNV 465


>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
          Length = 909

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 378 TAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFG 554
           T  GG V +  L   G    +   Q P   P S GNNNLLC + +   Q I  +   FG
Sbjct: 409 TQCGGVVFNQDLGNFGIRTCMKDQQCPHNIP-STGNNNLLCLLPVEILQTIAGMLDGFG 466


>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1431

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 14  RQNGRNKTSSSAVHWRYIRYAEKRKRRI 97
           R+ G  + ++SA+ W  IRY +K  +RI
Sbjct: 807 RRTGELRANNSALEWNIIRYLDKYGQRI 834


>SB_33022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 273 DSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLS 404
           D+ +FT+ D  K   D    Y D D  + LHGTD     GS ++
Sbjct: 481 DNQEFTVGDRDKCGGDD---YRDGDDQIFLHGTDPGTSPGSCIN 521


>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1677

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 78   SAYRMYLQCTALELVLFRPFCLTCCH 1
            S YRM  +C A  L L    C  CCH
Sbjct: 1176 SEYRMVKKCRASPLSLLFSCCCCCCH 1201


>SB_24177| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-16)
          Length = 423

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 483 NNNLLCAVLIAATQ--RIPEVTVFFGAKLFRGTRVKKYRTRVFTHSTPRTFLRCW 641
           NNN+LC VL++     +I  +    G  L R   + K   R+ TH   R FL  W
Sbjct: 117 NNNILCRVLLSFEDLFQIVALLTMCGIALDRFVTLVKGLRRLMTHQRAR-FLILW 170


>SB_22396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 157 ASSCSCGSLLITLSISFCGTNTPFSFFSIPNV 62
           A + + G   +TL + F G + P +F  IPN+
Sbjct: 280 AITAAAGMTSVTLKLRFSGRDIPKTFVDIPNI 311


>SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)
          Length = 414

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 353 RGSARHRHNCVRWFGPVFHVGNRRKDCCTHW 445
           +GS  H+H CV W    +      K  C  W
Sbjct: 322 KGSMLHKHVCVDWVDTPYKGSTVHKHVCVDW 352


>SB_57841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 483 NNNLLCAVLIAATQ--RIPEVTVFFGAKLFRGTRVKKYRTRVFTHSTPRTFLRCW 641
           NNN+LC VL++     +I  +    G  L R   + K   R+ TH   R FL  W
Sbjct: 117 NNNILCRVLLSFEDLFQIVALLTMCGIALDRFVTLVKGLRRLMTHQRAR-FLILW 170


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 531 PEVTVFFGAKLFRGTRVKKYRTRVFTHSTP 620
           P+VT++F   LF  T +  YRT+V   + P
Sbjct: 267 PQVTMYFNLGLFTITSMALYRTKVMLCNNP 296


>SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)
          Length = 262

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -3

Query: 524 LSGRYQHSA*QIVVTIASRLK--YWNLSTSEYNSLSDGFQHERQDRT-TVRSCVGAVQNH 354
           L  RY H    + VTI SRL+  Y + + +    L   + H     T T++S       H
Sbjct: 122 LRSRYSHGHDTVTVTIQSRLRCSYGHDTVTVTMQLRSRYSHGHDAVTVTIQSRSRCSHGH 181

Query: 353 ESIVVMVKS 327
           +++ V ++S
Sbjct: 182 DTVTVTIQS 190


>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 48  LYTG--GTFGMLKNEKGVLVPQKDIESVIRRLP 140
           LY G  G FGML     +   QK+IES+++R P
Sbjct: 160 LYNGKKGNFGMLDQIMALKWVQKNIESIMQRRP 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,761,918
Number of Sequences: 59808
Number of extensions: 583178
Number of successful extensions: 1700
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)